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We propose a simple tractable pair hidden Markov model for pairwise sequence alignment that accounts for the presence of short tandem repeats. Using the framework of gain functions, we design several optimization criteria for decoding this…

Quantitative Methods · Quantitative Biology 2013-07-31 Michal Nánási , Tomáš Vinař , Broňa Brejová

In this paper, we propose an algorithm for estimating the parameters of a time-homogeneous hidden Markov model from aggregate observations. This problem arises when only the population level counts of the number of individuals at each time…

Machine Learning · Computer Science 2021-11-16 Rahul Singh , Qinsheng Zhang , Yongxin Chen

According to a 1975 result of T. Kaijser, if some nonvanishing product of hidden Markov model (HMM) stepping matrices is subrectangular, and the underlying chain is aperiodic, the corresponding $\alpha$-chain has a unique invariant limiting…

Probability · Mathematics 2007-05-23 Fred Kochman , Jim Reeds

We derive some key extremal features for $k$th order Markov chains that can be used to understand how the process moves between an extreme state and the body of the process. The chains are studied given that there is an exceedance of a…

Statistics Theory · Mathematics 2023-01-27 Ioannis Papastathopoulos , Adrian Casey , Jonathan A. Tawn

In this paper we present a novel methodology to perform Bayesian model selection in linear models with heavy-tailed distributions. We consider a finite mixture of distributions to model a latent variable where each component of the mixture…

Methodology · Statistics 2017-08-21 Flávio B Gonçalves , Marcos O. Prates , Victor H. Lachos

Hidden Markov models (HMMs) are popular models to identify a finite number of latent states from sequential data. However, fitting them to large data sets can be computationally demanding because most likelihood maximization techniques…

There has been a recent surge of powerful tools to show rapid mixing of Markov chains, via functional inequalities such as Poincar\'e inequalities. In many situations, Markov chains fail to mix rapidly from a worst-case initialization, yet…

Probability · Mathematics 2024-11-25 Brice Huang , Sidhanth Mohanty , Amit Rajaraman , David X. Wu

We consider a stationary regularly varying time series which can be expressedas a function of a geometrically ergodic Markov chain. We obtain practical conditionsfor the weak convergence of the tail array sums and feasible estimators…

Statistics Theory · Mathematics 2018-09-25 Rafal Kulik , Philippe Soulier , Olivier Wintenberger , Rafa Kulik

We present a new algorithm for identifying the transition and emission probabilities of a hidden Markov model (HMM) from the emitted data. Expectation-maximization becomes computationally prohibitive for long observation records, which are…

Computation and Language · Computer Science 2018-06-20 Kejun Huang , Xiao Fu , Nicholas D. Sidiropoulos

We link optimal filtering for hidden Markov models to the notion of duality for Markov processes. We show that when the signal is dual to a process that has two components, one deterministic and one a pure death process, and with respect to…

Statistics Theory · Mathematics 2014-10-23 Omiros Papaspiliopoulos , Matteo Ruggiero

Finite-state Markov models are widely used for modeling wireless channels affected by a variety of non-idealities, ranging from shadowing to interference. In an industrial environment, the derivation of a Markov model based on the wireless…

Systems and Control · Electrical Eng. & Systems 2021-04-30 Luis Felipe Florenzan Reyes , Francesco Smarra , Yuriy Zacchia Lun , Alessandro D'Innocenzo

We consider the problem of flexible modeling of higher order hidden Markov models when the number of latent states and the nature of the serial dependence, including the true order, are unknown. We propose Bayesian nonparametric methodology…

Methodology · Statistics 2019-02-06 Abhra Sarkar , David B. Dunson

We investigate the application of Weak Poincar\'e Inequalities (WPI) to Markov chains to study their rates of convergence and to derive complexity bounds. At a theoretical level we investigate the necessity of the existence of WPIs to…

Probability · Mathematics 2023-12-20 Christophe Andrieu , Anthony Lee , Sam Power , Andi Q. Wang

Nonlinear Markov Chains (nMC) are regarded as the original (linear) Markov Chains with nonlinear small perturbations. It fits real-world data better, but its associated properties are difficult to describe. A new approach is proposed to…

Probability · Mathematics 2022-12-13 Kaichen Xu

We investigate the use of a certain class of functional inequalities known as weak Poincar\'e inequalities to bound convergence of Markov chains to equilibrium. We show that this enables the straightforward and transparent derivation of…

Computation · Statistics 2024-09-25 Christophe Andrieu , Anthony Lee , Sam Power , Andi Q. Wang

There is a lack of methodological results for continuous time change detection due to the challenges of noninformative prior specification and efficient posterior inference in this setting. Most methodologies to date assume data are…

Methodology · Statistics 2025-04-28 Dan Cunha , Mark Friedl , Luis Carvalho

This paper introduces a new parsimonious structure for mixture of autoregressive models. the weighting coefficients are determined through latent random variables, following a hidden Markov model. We propose a dynamic programming algorithm…

Statistics Theory · Mathematics 2011-05-12 S. H. Alizadeh , S. Rezakhah

The presence of unobserved node specific heterogeneity in Exponential Random Graph Models (ERGM) is a general concern, both with respect to model validity as well as estimation instability. We therefore extend the ERGM by including node…

Computation · Statistics 2021-12-24 Sevag Kevork , Göran Kauermann

With the growth of magnitude of multi-agent networks, distributed optimization holds considerable significance within complex systems. Convergence, a pivotal goal in this domain, is contingent upon the analysis of infinite products of…

Optimization and Control · Mathematics 2024-01-29 Zhaoyue Xia , Jun Du , Chunxiao Jiang , H. Vincent Poor , Zhu Han , Yong Ren

Most of the existing works on provable guarantees for low-rank matrix completion algorithms rely on some unrealistic assumptions such that matrix entries are sampled randomly or the sampling pattern has a specific structure. In this work,…

Machine Learning · Statistics 2023-06-06 Hanbyul Lee , Rahul Mazumder , Qifan Song , Jean Honorio
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