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Horizontal gene Transfer (HT) denotes the transmission of genetic material between two living organisms, while the vertical transmission refers to a DNA transfer from parents to their offspring. Consistent experimental evidence report that…

Populations and Evolution · Quantitative Biology 2021-02-12 Vincent Calvez , Susely Figueroa Iglesias , Hélène Hivert , Sylvie Méléard , Anna Melnykova , Samuel Nordmann

In this paper we study a diffusive age structured epidemic model with disease transmission between vector and host populations. The dynamics of the populations are described by reaction-diffusion equations, with infection age structure of…

Analysis of PDEs · Mathematics 2017-06-15 William E. Fitzgibbon , Jeffrey J. Morgan , Glenn F. Webb , Yixiang Wu

A simple, but ``classical``, stochastic model for epidemic spread in a finite, but large, population is studied. The progress of the epidemic can be divided into three different phases that requires different tools to analyse. Initially the…

Populations and Evolution · Quantitative Biology 2018-05-29 Åke Svensson

A stochastic epidemic model accounting for the effect of contact-tracing on the spread of an infectious disease is studied. Precisely, individuals identified as infected may contribute to detecting other infectious individuals by providing…

Probability · Mathematics 2009-03-28 Stéphan Clémençon , Viet Chi Tran , Hector De Arazoza

We present a model for the dynamics of a population of bacteria with a continuum of traits, who compete for resources and exchange horizontally (transfer) an otherwise vertically inherited trait with possible mutations. Competition…

Probability · Mathematics 2017-07-27 Sylvain Billiard , Pierre Collet , Régis Ferrière , Sylvie Méléard , Viet Chi Tran

We consider the contact process on a dynamic graph defined as a random $d$-regular graph with a stationary edge-switching dynamics. In this graph dynamics, independently of the contact process state, each pair $\{e_1,e_2\}$ of edges of the…

Mathematical models of infectious disease transmission typically neglect within-host dynamics. Yet within-host dynamics - including pathogen replication, host immune responses, and interactions with microbiota - are crucial not only for…

Populations and Evolution · Quantitative Biology 2023-12-20 Cameron A. Smith , Ben Ashby

A stochastic model, describing the growth of two competing infections on $\mathbb{R}^d$, is introduced. The growth is driven by outbursts in the infected region, an outburst in the type 1 (2) infected region transmitting the type 1 (2)…

Probability · Mathematics 2015-09-24 Maria Deijfen , Olle Häggström , Jonathan Bagley

We study survival and extinction of a long-range infection process on a diluted one-dimensional lattice in discrete time. The infection can spread to distant vertices according to a Pareto distribution, however spreading is also prohibited…

Probability · Mathematics 2023-10-19 Benedikt Jahnel , Anh Duc Vu

Many epidemic processes in networks spread by stochastic contacts among their connected vertices. There are two limiting cases widely analyzed in the physics literature, the so-called contact process (CP) where the contagion is expanded at…

Computational Physics · Physics 2010-02-19 S. Gomez , A. Arenas , J. Borge-Holthoefer , S. Meloni , Y. Moreno

We propose the following model for speciation and extinction. Birth and deaths occur according to spatially inhomogeneous contact rates. We assume that the ratio of the birth rate over the death rate at a site converges to some limit as the…

Probability · Mathematics 2015-06-15 Rinaldo B. Schinazi

Global strategies to contain a pandemic, such as social distancing and protective measures, are designed to reduce the overall transmission rate between individuals. Despite such measures, essential institutions, including hospitals,…

Populations and Evolution · Quantitative Biology 2022-09-07 Roberto Morán-Tovar , Henning Gruell , Florian Klein , Michael Lässig

We consider a contact process on $Z^d$ with two species that interact in a symbiotic manner. Each site can either be vacant or occupied by individuals of species $A$ and/or $B$. Multiple occupancy by the same species at a single site is…

Probability · Mathematics 2019-12-11 Rick Durrett , Dong Yao

We use a stochastic Markovian dynamics approach to describe the spreading of vector-transmitted diseases, like dengue, and the threshold of the disease. The coexistence space is composed by two structures representing the human and mosquito…

Populations and Evolution · Quantitative Biology 2013-01-01 David R. Souza , Tânia Tomé , Suani T. R. Pinho , Florisneide R. Barreto , Mário J. de Oliveira

We investigate the contact process on scale-free networks evolving by a stationary dynamics whereby each vertex independently updates its connections with a rate depending on its power. This rate can be slowed down or speeded up by virtue…

Probability · Mathematics 2024-09-18 Emmanuel Jacob , Amitai Linker , Peter Mörters

In the system we study, 1's and 0's represent occupied and vacant sites in the contact process with births at rate $\lambda$ and deaths at rate 1. $-1$'s are sterile individuals that do not reproduce but appear spontaneously on vacant sites…

Probability · Mathematics 2021-08-13 Xiangying Huang , Rick Durrett

We study a stochastic epidemic model consisting of elements (organisms in a community or cells in tissue) with fixed positions, in which damage or disease is transmitted by diffusing agents ("signals") emitted by infected individuals. The…

Populations and Evolution · Quantitative Biology 2015-06-05 Fernando P. Faria , Ronald Dickman

Stochastic modeling of disease dynamics has had a long tradition. Among the first epidemic models including a spatial structure in the form of local interactions is the contact process. In this article we investigate two extensions of the…

Probability · Mathematics 2007-05-23 L. Belhadji , N. Lanchier

We introduce a generalized version of the frog model to describe the invasion of a parasite population in a spatially structured immobile host population with host immunity on the integer line. Parasites move according to simple symmetric…

Probability · Mathematics 2025-02-17 Sascha Franck , Cornelia Pokalyuk

We study the spread of an infection on top of a moving population. The environment evolves as a zero range process on the integer lattice starting in equilibrium. At time zero, the set of infected particles is composed by those which are on…

Probability · Mathematics 2020-06-30 Rangel Baldasso , Augusto Teixeira