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We revisit the classic border tree data structure [Gu, Farach, Beigel, SODA 1994] that answers the following prefix-suffix queries on a string $T$ of length $n$ over an integer alphabet $\Sigma=[0,\sigma)$: for any $i,j \in [0,n)$ return…

Data Structures and Algorithms · Computer Science 2024-11-07 Solon P. Pissis

We describe several polygon compression techniques to enable efficient transmission of polygons representing geographical targets. The main application is to embed compressed polygons to emergency alert messages that have strict length…

Information Theory · Computer Science 2015-09-21 Abhinav Jauhri , Martin Griss , Hakan Erdogmus

We present a new algorithm for subsequence matching in grammar compressed strings. Given a grammar of size $n$ compressing a string of size $N$ and a pattern string of size $m$ over an alphabet of size $\sigma$, our algorithm uses…

Data Structures and Algorithms · Computer Science 2014-06-06 Philip Bille , Patrick Hagge Cording , Inge Li Gørtz

The observed frequency of the longest proper prefix, the longest proper suffix, and the longest infix of a word $w$ in a given sequence $x$ can be used for classifying $w$ as avoided or overabundant. The definitions used for the expectation…

We show that the compressed suffix array and the compressed suffix tree of a string $T$ can be built in $O(n)$ deterministic time using $O(n\log\sigma)$ bits of space, where $n$ is the string length and $\sigma$ is the alphabet size.…

Data Structures and Algorithms · Computer Science 2016-11-15 J. Ian Munro , Gonzalo Navarro , Yakov Nekrich

We solve an open problem related to an optimal encoding of a straight line program (SLP), a canonical form of grammar compression deriving a single string deterministically. We show that an information-theoretic lower bound for representing…

Data Structures and Algorithms · Computer Science 2013-06-18 Yasuo Tabei , Yoshimasa Takabatake , Hiroshi Sakamoto

Re-Pair is an efficient grammar compressor that operates by recursively replacing high-frequency character pairs with new grammar symbols. The most space-efficient linear-time algorithm computing Re-Pair uses $(1+\epsilon)n+\sqrt n$ words…

Data Structures and Algorithms · Computer Science 2017-04-28 Philip Bille , Inge Li Gørtz , Nicola Prezza

The well-known dictionary-based algorithms of the Lempel-Ziv (LZ) 77 family are the basis of several universal lossless compression techniques. These algorithms are asymmetric regarding encoding/decoding time and memory requirements, with…

Data Structures and Algorithms · Computer Science 2009-12-31 Artur Ferreira , Arlindo Oliveira , Mario Figueiredo

Let $\mathcal{D}$ be a collection of $D$ documents, which are strings over an alphabet of size $\sigma$, of total length $n$. We describe a data structure that uses linear space and and reports $k$ most relevant documents that contain a…

Data Structures and Algorithms · Computer Science 2013-08-02 Gonzalo Navarro , Yakov Nekrich

The Lempel-Ziv parsing of a string (LZ77 for short) is one of the most important and widely-used algorithmic tools in data compression and string processing. We show that the Lempel-Ziv parsing of a string of length $n$ on an alphabet of…

Data Structures and Algorithms · Computer Science 2015-07-28 Djamal Belazzougui , Simon J. Puglisi

Constrained codes are used to prevent errors from occurring in various data storage and data transmission systems. They can help in increasing the storage density of magnetic storage devices, in managing the lifetime of electronic storage…

Information Theory · Computer Science 2022-09-07 Ahmed Hareedy , Beyza Dabak , Robert Calderbank

Suppose there is a large file which should be transmitted (or stored) and there are several (say, m) admissible data-compressors. It seems natural to try all the compressors and then choose the best, i.e. the one that gives the shortest…

Information Theory · Computer Science 2018-09-11 Boris Ryabko

We introduce a compressed suffix array representation that, on a text $T$ of length $n$ over an alphabet of size $\sigma$, can be built in $O(n)$ deterministic time, within $O(n\log\sigma)$ bits of working space, and counts the number of…

Data Structures and Algorithms · Computer Science 2017-09-05 J. Ian Munro , Gonzalo Navarro , Yakov Nekrich

There is a large literature devoted to the problem of finding an optimal (min-cost) prefix-free code with an unequal letter-cost encoding alphabet of size. While there is no known polynomial time algorithm for solving it optimally there are…

Information Theory · Computer Science 2007-07-13 Mordecai Golin , Li Jian

Packing several characters into one computer word is a simple and natural way to compress the representation of a string and to speed up its processing. Exploiting this idea, we propose an index for a packed string, based on a {\em sparse…

Data Structures and Algorithms · Computer Science 2015-03-19 Roman Kolpakov , Gregory Kucherov , Tatiana Starikovskaya

We describe a method for lossless quantum compression if the output of the information source is not known. We compute the best possible compression rate, minimizing the expected base length of the output quantum bit string (the base length…

Quantum Physics · Physics 2009-01-19 Markus Mueller , Caroline Rogers , Rajagopal Nagarajan

In this paper we investigate the problem of partitioning an input string T in such a way that compressing individually its parts via a base-compressor C gets a compressed output that is shorter than applying C over the entire T at once.…

Data Structures and Algorithms · Computer Science 2009-06-26 Paolo Ferragina , Igor Nitto , Rossano Venturini

Given a set of pattern strings $\mathcal{P}=\{P_1, P_2,\ldots P_k\}$ and a text string $S$, the classic dictionary matching problem is to report all occurrences of each pattern in $S$. We study the dictionary problem in the compressed…

Data Structures and Algorithms · Computer Science 2025-09-04 Philip Bille , Inge Li Gørtz , Simon J. Puglisi , Simon R. Tarnow

We prove that longest common prefix (LCP) information can be stored in much less space than previously known. More precisely, we show that in the presence of the text and the suffix array, o(n) additional bits are sufficient to answer…

Data Structures and Algorithms · Computer Science 2010-02-19 Johannes Fischer

There is a common problem of operating on hash values of elements of some database. In this paper there will be analyzed informational content of such general task and how to practically approach such found lower boundaries. Minimal prefix…

Information Theory · Computer Science 2012-07-10 Jarek Duda