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Network alignment aims to find regions of topological or functional similarities between networks. In computational biology, it can be used to transfer biological knowledge from a well-studied species to a poorly-studied species between…

Molecular Networks · Quantitative Biology 2014-10-21 Joseph Crawford , Tijana Milenković

Network alignment (NA) compares networks with the goal of finding a node mapping that uncovers highly similar (conserved) network regions. Existing NA methods are homogeneous, i.e., they can deal only with networks containing nodes and…

Molecular Networks · Quantitative Biology 2018-03-30 Shawn Gu , John Johnson , Fazle E. Faisal , Tijana Milenkovic

Biological network alignment identifies topologically and functionally conserved regions between networks of different species. It encompasses two algorithmic steps: node cost function (NCF), which measures similarities between nodes in…

Molecular Networks · Quantitative Biology 2014-07-21 Joseph Crawford , Yihan Sun , Tijana Milenković

Biological network alignment aims to identify similar regions between networks of different species. Existing methods compute node "similarities" to rapidly identify from possible alignments the "high-scoring" alignments with respect to the…

Molecular Networks · Quantitative Biology 2013-11-12 Vikram Saraph , Tijana Milenković

In view of the node importance in weighted networks, weighted expected method (WEM), was proposed in this paper, which take an advantages of uncertain graph algorithm. First, a weight processing method is proposed based on the relationship…

Social and Information Networks · Computer Science 2021-11-23 Linjie Chen , Na Zhao , Jie Li , Zhen Long , Ming Jing , Jian Wang

Networks can model real-world systems in a variety of domains. Network alignment (NA) aims to find a node mapping that conserves similar regions between compared networks. NA is applicable to many fields, including computational biology,…

Social and Information Networks · Computer Science 2017-02-01 Vipin Vijayan , Dominic Critchlow , Tijana Milenkovic

Network alignment (NA) aims to find a node mapping between molecular networks of different species that identifies topologically or functionally similar network regions. Analogous to genomic sequence alignment, NA can be used to transfer…

Molecular Networks · Quantitative Biology 2016-04-07 Vipin Vijayan , Tijana Milenkovic

Network alignment, the process of finding correspondences between nodes in different graphs, has many scientific and industrial applications. Existing unsupervised network alignment methods find suboptimal alignments that break up node…

Social and Information Networks · Computer Science 2020-08-19 Xiyuan Chen , Mark Heimann , Fatemeh Vahedian , Danai Koutra

Prediction tasks over nodes and edges in networks require careful effort in engineering features used by learning algorithms. Recent research in the broader field of representation learning has led to significant progress in automating…

Social and Information Networks · Computer Science 2016-07-05 Aditya Grover , Jure Leskovec

Using edge weights is essential for modeling real-world systems where links possess relevant information, and preserving this information in low-dimensional representations is relevant for classification and prediction tasks. This paper…

Social and Information Networks · Computer Science 2025-08-12 Adilson Vital , Filipi N. Silva , Diego R. Amancio

Network alignment is useful for multiple applications that require increasingly large graphs to be processed. Existing research approaches this as an optimization problem or computes the similarity based on node representations. However,…

Social and Information Networks · Computer Science 2020-08-03 Kyle K. Qin , Flora D. Salim , Yongli Ren , Wei Shao , Mark Heimann , Danai Koutra

Data-driven machine learning approaches have recently been proposed to facilitate wireless network optimization by learning latent knowledge from historical optimization instances. However, existing methods do not well handle the topology…

Networking and Internet Architecture · Computer Science 2021-01-06 Shuai Zhang , Bo Yin , Yu Cheng

We consider the setting where many networks are observed on a common node set, and each observation comprises edge weights of a network, covariates observed at each node, and an overall response. The goal is to use the edge weights and node…

Methodology · Statistics 2023-08-23 Daniel Kessler , Keith Levin , Elizaveta Levina

Representing nodes in a network as dense vectors node embeddings is important for understanding a given network and solving many downstream tasks. In particular, for weighted homophilous graphs where similar nodes are connected with larger…

Social and Information Networks · Computer Science 2023-08-14 Jun Hee Kim , Jaeman Son , Hyunsoo Kim , Eunjo Lee

For the goal of automated design of high-performance deep convolutional neural networks (CNNs), Neural Architecture Search (NAS) methodology is becoming increasingly important for both academia and industries.Due to the costly stochastic…

Machine Learning · Computer Science 2021-10-12 Shengran Hu , Ran Cheng , Cheng He , Zhichao Lu , Jing Wang , Miao Zhang

Network embedding is a highly effective method to learn low-dimensional node vector representations with original network structures being well preserved. However, existing network embedding algorithms are mostly developed for a single…

Social and Information Networks · Computer Science 2021-05-06 Xiao Shen , Quanyu Dai , Sitong Mao , Fu-lai Chung , Kup-Sze Choi

Extracting information from real-world large networks is a key challenge nowadays. For instance, computing a node centrality may become unfeasible depending on the intended centrality due to its computational cost. One solution is to…

Social and Information Networks · Computer Science 2020-11-30 Matheus R. F. Mendonça , André M. S. Barreto , Artur Ziviani

Existing network embedding approaches tackle the problem of learning low-dimensional node representations. However, networks can also be seen in the light of edges interlinking pairs of nodes. The broad goal of this paper is to introduce…

Social and Information Networks · Computer Science 2020-11-12 Giuseppe Pirrò

Due to their high computational efficiency on a continuous space, gradient optimization methods have shown great potential in the neural architecture search (NAS) domain. The mapping of network representation from the discrete space to a…

Machine Learning · Computer Science 2020-06-20 Jian Li , Yong Liu , Jiankun Liu , Weiping Wang

Node embedding is the task of extracting concise and informative representations of certain entities that are connected in a network. Various real-world networks include information about both node connectivity and certain node attributes,…

Social and Information Networks · Computer Science 2022-02-24 Charilaos I. Kanatsoulis , Nicholas D. Sidiropoulos
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