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Hypergraphs are a common model for multiway relationships in data, and hypergraph semi-supervised learning is the problem of assigning labels to all nodes in a hypergraph, given labels on just a few nodes. Diffusions and label spreading are…

Machine Learning · Computer Science 2022-02-14 Francesco Tudisco , Konstantin Prokopchik , Austin R. Benson

This thesis investigates how the sub-structure of words can be accounted for in probabilistic models of language. Such models play an important role in natural language processing tasks such as translation or speech recognition, but often…

Computation and Language · Computer Science 2015-08-19 Jan A. Botha

Diffusion generative models have emerged as a powerful framework for addressing problems in structural biology and structure-based drug design. These models operate directly on 3D molecular structures. Due to the unfavorable scaling of…

Biomolecules · Quantitative Biology 2024-05-10 Ian Dunn , David Ryan Koes

Graphs, such as social networks, word co-occurrence networks, and communication networks, occur naturally in various real-world applications. Analyzing them yields insight into the structure of society, language, and different patterns of…

Social and Information Networks · Computer Science 2019-08-22 Palash Goyal , Emilio Ferrara

This work presents an unsupervised and semi-automatic image segmentation approach where we formulate the segmentation as a inference problem based on unary and pairwise assignment probabilities computed using low-level image cues. The…

Computer Vision and Pattern Recognition · Computer Science 2023-05-16 Ayelet Heimowitz , Yosi Keller

Daily internet communication relies heavily on tree-structured graphs, embodied by popular data formats such as XML and JSON. However, many recent generative (probabilistic) models utilize neural networks to learn a probability distribution…

Machine Learning · Computer Science 2024-08-20 Milan Papež , Martin Rektoris , Tomáš Pevný , Václav Šmídl

Calculus and geometry are ubiquitous in the theoretical modelling of scientific phenomena, but have historically been very challenging to apply directly to real data as statistics. Diffusion geometry is a new theory that reformulates…

Differential Geometry · Mathematics 2026-02-09 Iolo Jones , David Lanners

Recent years have witnessed a rise in real-world data captured with rich structural information that can be conveniently depicted by multi-relational graphs. While inference of continuous node features across a simple graph is rather…

Machine Learning · Computer Science 2021-10-18 Eda Bayram

The dynamics of information diffusion within graphs is a critical open issue that heavily influences graph representation learning, especially when considering long-range propagation. This calls for principled approaches that control and…

Machine Learning · Computer Science 2025-02-14 Simon Heilig , Alessio Gravina , Alessandro Trenta , Claudio Gallicchio , Davide Bacciu

The inverse statistical problem of finding direct interactions in complex networks is difficult. In the natural sciences, well-controlled perturbation experiments are widely used to probe the structure of complex networks. However, our…

Disordered Systems and Neural Networks · Physics 2019-10-24 Jialong Jiang , David A. Sivak , Matt Thomson

Semiring algebras have been shown to provide a suitable language to formalize many noteworthy combinatorial problems. For instance, the Shortest-Path problem can be seen as a special case of the Algebraic-Path problem when applied to the…

Computational Complexity · Computer Science 2025-12-04 Ambroise Baril , Miguel Couceiro , Victor Lagerkvist

Probabilistic representations, such as Bayesian and Markov networks, are fundamental to much of statistical machine learning. Thus, learning probabilistic representations directly from data is a deep challenge, the main computational…

Machine Learning · Computer Science 2018-09-20 Andreas Bueff , Stefanie Speichert , Vaishak Belle

We propose Embedding Propagation (EP), an unsupervised learning framework for graph-structured data. EP learns vector representations of graphs by passing two types of messages between neighboring nodes. Forward messages consist of label…

Machine Learning · Computer Science 2017-10-10 Alberto Garcia-Duran , Mathias Niepert

This paper addresses the problem of optimizing the allocation of labeling resources for semi-supervised belief representation learning in social networks. The objective is to strategically identify valuable messages on social media graphs…

Machine Learning · Computer Science 2024-10-28 Dachun Sun , Ruijie Wang , Jinning Li , Ruipeng Han , Xinyi Liu , You Lyu , Tarek Abdelzaher

Most problems within and beyond the scientific domain can be framed into one of the following three levels of complexity of function approximation. Type 1: Approximate an unknown function given input/output data. Type 2: Consider a…

Machine Learning · Computer Science 2025-10-14 Théo Bourdais , Pau Batlle , Xianjin Yang , Ricardo Baptista , Nicolas Rouquette , Houman Owhadi

Greater theorizing of methods in the computational humanities is needed for epistemological and interpretive clarity, and therefore the maturation of the field. In this paper, we frame such modeling work as engaging in translation work from…

Computation and Language · Computer Science 2025-08-04 Zachary K. Stine , James E. Deitrick

Graphs are fundamental data structures which concisely capture the relational structure in many important real-world domains, such as knowledge graphs, physical and social interactions, language, and chemistry. Here we introduce a powerful…

Machine Learning · Computer Science 2018-03-12 Yujia Li , Oriol Vinyals , Chris Dyer , Razvan Pascanu , Peter Battaglia

Current distributed data fabrics lack a rigorous mathematical foundation, often relying on ad-hoc architectures that struggle with consistency, lineage, and scale. We propose a mathematical framework for data fabrics, unifying heterogeneous…

Databases · Computer Science 2026-02-17 T. Shaska , I. Kotsireas

We introduce Graph-Structured Sum-Product Networks (GraphSPNs), a probabilistic approach to structured prediction for problems where dependencies between latent variables are expressed in terms of arbitrary, dynamic graphs. While many…

Machine Learning · Computer Science 2017-11-23 Kaiyu Zheng , Andrzej Pronobis , Rajesh P. N. Rao

Networks represent relationships between entities in many complex systems, spanning from online social interactions to biological cell development and brain connectivity. In many cases, relationships between entities are unambiguously…

Social and Information Networks · Computer Science 2018-01-23 Ivan Brugere , Brian Gallagher , Tanya Y. Berger-Wolf