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Stochastic programming can be applied to consider uncertainties in energy system optimization models for capacity expansion planning. However, these models become increasingly large and time-consuming to solve, even without considering…

Optimization and Control · Mathematics 2025-08-15 Shima Sasanpour , Manuel Wetzel , Karl-Kiên Cao , Hans Christian Gils , Andrés Ramos

We propose a simulated annealing algorithm specifically tailored to optimise total retrieval times in a multi-level warehouse under complex pre-batched picking constraints. Experiments on real data from a picker-to-parts order picking…

Artificial Intelligence · Computer Science 2017-04-05 Alexander Eckrot , Carina Geldhauser , Jan Jurczyk

This paper considers single-machine scheduling problems in which a given solution, i.e. an ordered set of jobs, has to be improved as much as possible by re-sequencing the jobs. The need for rescheduling may arise in different contexts,…

Data Structures and Algorithms · Computer Science 2021-07-01 Gaia Nicosia , Andrea Pacifici , Ulrich Pferschy , Julia Resch , Giovanni Righini

To double the cellular population of ribosomes, a fraction of the active ribosomes is allocated to synthesize ribosomal proteins. Subsequently, these ribosomal proteins enter the ribosome self-assembly process, synthesizing new ribosomes…

Other Quantitative Biology · Quantitative Biology 2025-03-18 Dotan Goberman , Anjan Roy , Rami Pugatch

In a probabilistic cellular automaton in which all local transitions have positive probability, the problem of keeping a bit of information indefinitely is nontrivial, even in an infinite automaton. Still, there is a solution in 2…

Probability · Mathematics 2024-01-26 Peter Gacs

In growing active matter systems, a large collection of engineered or living autonomous units metabolize free energy and create order at different length scales as they proliferate and migrate collectively. One such example is bacterial…

Soft Condensed Matter · Physics 2021-06-15 Japinder Nijjer , Changhao Li , Qiuting Zhang , Haoran Lu , Sulin Zhang , Jing Yan

Classical list scheduling is a very popular and efficient technique for scheduling jobs in parallel and distributed platforms. It is inherently centralized. However, with the increasing number of processors, the cost for managing a single…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-07-20 Marc Tchiboukdjian , Nicolas Gast , Denis Trystram

We present two adaptive schemes for dynamically choosing the number of parallel instances in parallel evolutionary algorithms. This includes the choice of the offspring population size in a (1+$\lambda$) EA as a special case. Our schemes…

Data Structures and Algorithms · Computer Science 2011-03-03 Jörg Lässig , Dirk Sudholt

We consider the problem of sampling and approximately counting an arbitrary given motif $H$ in a graph $G$, where access to $G$ is given via queries: degree, neighbor, and pair, as well as uniform edge sample queries. Previous algorithms…

Data Structures and Algorithms · Computer Science 2021-07-20 Amartya Shankha Biswas , Talya Eden , Ronitt Rubinfeld

This paper addresses the optimization of scheduling for workers at a logistics depot using a combination of genetic algorithm and simulated annealing algorithm. The efficient scheduling of permanent and temporary workers is crucial for…

Neural and Evolutionary Computing · Computer Science 2024-05-21 Jinxin Xu , Haixin Wu , Yu Cheng , Liyang Wang , Xin Yang , Xintong Fu , Yuelong Su

Chemotaxis receptors in E. coli form clusters at the cell poles and also laterally along the cell body, and this clustering plays an important role in signal transduction. Recently, experiments using flourrescence imaging have shown that,…

Statistical Mechanics · Physics 2008-11-29 Hui Wang , Ned S. Wingreen , Ranjan Mukhopadhyay

A distributed-memory parallelization strategy for the density matrix renormalization group is proposed for cases where correlation functions are required. This new strategy has substantial improvements with respect to previous works. A…

Strongly Correlated Electrons · Physics 2010-04-20 Julian Rincon , D. J. Garcia , K. Hallberg

Cells can use periodic enzyme activities to adapt to periodic environments or existing internal rhythms and to establish metabolic cycles that schedule biochemical processes in time. A periodically changing allocation of the protein budget…

Molecular Networks · Quantitative Biology 2022-10-05 Wolfram Liebermeister

We introduce a simple physical picture to explain the process of molecular sorting, whereby specific proteins are concentrated and distilled into submicrometric lipid vesicles in eukaryotic cells. To this purpose, we formulate a model based…

This paper investigates the parallel complexity of several non-equilibrium growth models. Invasion percolation, Eden growth, ballistic deposition and solid-on-solid growth are all seemingly highly sequential processes that yield…

Condensed Matter · Physics 2009-10-22 J. Machta , R. Greenlaw

In this paper we study a proportionate flow shop of batching machines with release dates and a fixed number $m \geq 2$ of machines. The scheduling problem has so far barely received any attention in the literature, but recently its…

Data Structures and Algorithms · Computer Science 2020-11-30 Christoph Hertrich , Christian Weiß , Heiner Ackermann , Sandy Heydrich , Sven O. Krumke

We propose an asynchronous iterative scheme that allows a set of interconnected nodes to distributively reach an agreement within a pre-specified bound in a finite number of steps. While this scheme could be adopted in a wide variety of…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-01-13 Andreas Grammenos , Themistoklis Charalambous , Evangelia Kalyvianaki

Computations, where the number of results is much smaller than the input data and are produced through some sort of accumulation, are called Reductions. Reductions appear in many scientific applications. Usually, reductions admit an…

Programming Languages · Computer Science 2018-01-19 Nirmal Prajapati

During batch growth on mixtures of two growth-limiting substrates, microbes consume the substrates either sequentially or simultaneously. These growth patterns are manifested in all types of bacteria and yeasts. The ubiquity of these growth…

Cell Behavior · Quantitative Biology 2008-01-09 Jason T. Noel , Atul Narang

This paper proposes a new highly scalable and asymptotically optimal control synthesis algorithm from linear temporal logic specifications, called $\text{STyLuS}^{*}$ for large-Scale optimal Temporal Logic Synthesis, that is designed to…

Robotics · Computer Science 2020-04-09 Yiannis Kantaros , Michael M. Zavlanos