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Intracellular components explore the cytoplasm via active motor-driven transport in conjunction with passive diffusion. We model the motion of organelles in narrow tubular cells using analytical techniques and numerical simulations to study…

Biological Physics · Physics 2018-04-11 Saurabh Mogre , Elena F. Koslover

We have generalized the semi-analytic approach of special flow to the description of flows of passive particles taking into account internal noise. The model is represented by a series of recurrence relations. The recurrence relations are…

Statistical Mechanics · Physics 2023-12-12 Boris S. Maryshev , Lyudmila S. Klimenko

We study, numerically and analytically, the forced transport of deformable containers through a narrow constriction. Our central aim is to quantify the competition between the constriction geometry and the active forcing, regulating whether…

Soft Condensed Matter · Physics 2015-02-10 Remy Kusters , Thijs van der Heijden , Badr Kaoui , Jens Harting , Cornelis Storm

We report a systematic study of the dynamics of self-propelled particles (SPPs) over a one-dimensional periodic potential landscape, which is fabricated on a microgroove-patterned polydimethylsiloxane (PDMS) substrate. From the measured…

Soft Condensed Matter · Physics 2023-03-29 Yan Wen , Zhihao Li , Haiqin Wang , Jing Zheng , Jinyao Tang , Pik-Yin Lai , Xinpeng Xu , Penger Tong

Channel-mediated transport is ubiquitous in biology. A series of works by different theoreticians have sought to determine how the diffusive flux through a channel depends on (a) stochastic gating, (b) channel geometry, and (c)…

Statistical Mechanics · Physics 2026-03-17 Sean D Lawley

Selectivity of particles in a region of space can be achieved by applying external potentials to influence the particles in that region. We investigate static and dynamical properties of size selectivity in binary fluid mixtures of two…

Soft Condensed Matter · Physics 2010-01-18 Roland Roth , Markus Rauscher , Andrew J. Archer

We present here the measurement of the diffusivity of spherical particles closely confined by narrow microchannels. Our experiments yield a two-dimensional map of the position-dependent diffusion coefficients parallel and perpendicular to…

Fluid Dynamics · Physics 2014-06-20 Simon L Dettmer , Stefano Pagliara , Karolis Misiunas , Ulrich F Keyser

The transmission matrix of a disordered medium, experimentally accessible for classical waves and central to the theory of mesoscopic electronic transport, supports transmission eigenchannels ranging from complete to vanishing transmission.…

Optics · Physics 2026-05-19 Israel Kurtz , Yiming Huang , Zhou Shi , Azriel Z Genack

Diffusive properties of interacting magnetic dipoles confined in a parabolic narrow channel and in the presence of a periodic modulated (corrugated) potential along the unconfined direction are studied using Brownian dynamics simulations.…

Soft Condensed Matter · Physics 2014-03-17 D. Lucena , J. E. Galván-Moya , W. P. Ferreira , F. M. Peeters

Soft colloids allow to explore high density states well beyond random close packing. An important open question is whether softness controls the dynamics under these dense conditions. While experimental works reported conflicting results,…

Soft Condensed Matter · Physics 2021-06-08 Nicoletta Gnan , Emanuela Zaccarelli

Diffusive transport is a universal phenomenon, throughout both biological and physical sciences, and models of diffusion are routinely used to interrogate diffusion-driven processes. However, most models neglect to take into account the…

Quantitative Methods · Quantitative Biology 2015-10-28 Paul R. Taylor , Christian A. Yates , Matthew J. Simpson , Ruth E. Baker

Active fluctuations are detected in a growing number of systems due to self-propulsion mechanisms or collisions with active environment. They drive the system far from equilibrium and can induce phenomena which at equilibrium states are…

Statistical Mechanics · Physics 2024-09-12 K. Białas , J. Łuczka , J. Spiechowicz

Turbidity currents, seafloor flows driven by the excess density of suspended particles, are key conveyors of sediment, nutrient, and pollutant from the continental margins to deep ocean, and pose critical submarine geohazard risks. Due to…

Fluid Dynamics · Physics 2023-03-06 Edward W. G. Skevington , Robert M. Dorrell

Dynamic facilitation theory assumes short-ranged dynamic constraints to be the essential feature of supercooled liquids and draws much of its conclusions from the study of kinetically constrained models. While deceptively simple, these…

Materials Science · Physics 2012-06-12 Thomas Speck , David Chandler

Superhydrophobic one-dimensional surfaces reduce drag and generate transverse hydrodynamic phenomena by combining hydrophobicity and roughness to trap gas bubbles in microscopic textures. Recent works in this area have focused on specific…

Fluid Dynamics · Physics 2014-01-23 Tatiana V. Nizkaya , Evgeny S. Asmolov , Olga I. Vinogradova

Waves patterns in the Faraday instability have been studied for decades. Besides the rich dynamics that can be observed on the waves at the interface, Faraday waves hide beneath them an elusive range of flow patterns --or streaming…

Fluid Dynamics · Physics 2017-05-24 Nicolas Périnet , Pablo Gutiérrez , Héctor Urra , Nicolás Mujica , Leonardo Gordillo

Gravitational settling affects particle transport in turbulent flows in two ways; explicitly, by introducing a finite settling velocity, and implicitly, by modifying how the particles interact with the flow field. For wall-bounded flows,…

Fluid Dynamics · Physics 2025-12-04 Y. Zhang , D. H. Richter , A. D. Bragg

A simple model of an active colloid consisting of dumbbell-shaped particles that cyclically change their length without propelling themselves is proposed and analyzed. At nanoscales, it represents an idealization for bacterial cytoplasm or…

Adaptation and Self-Organizing Systems · Physics 2020-01-28 Yuki Koyano , Hiroyuki Kitahata , Alexander S. Mikhailov

Following our recent interest in metamaterial-based devices supporting resonant tunneling, energy squeezing and supercoupling through narrow waveguide channels and bends, here we analyze the fundamental physical mechanisms behind this…

Materials Science · Physics 2009-11-13 Andrea Alu , Mario G. Silveirinha , Nader Engheta

Single file translocation of a homopolymer through an active channel under the presence of a driving force is studied using Langevin dynamics simulation. It is shown that a channel with sticky walls and oscillating width could lead to…

Soft Condensed Matter · Physics 2013-02-01 Jack A. Cohen , Abhishek Chaudhuri , Ramin Golestanian