Related papers: On the Chain Pair Simplification Problem
We present approximation algorithms for the following NP-hard optimization problems related to bottleneck spanning trees in metric spaces. 1. The disjoint bottleneck spanning tree problem: Given $n$ pairs of points in a metric space, find…
The Closest Vector Problem (CVP) is a computational problem in lattices that is central to modern cryptography. The study of its fine-grained complexity has gained momentum in the last few years, partly due to the upcoming deployment of…
Fast, efficient and reliable algorithms for pairwise alignment of protein structures are in ever increasing demand for analyzing the rapidly growing data of protein structures. CLePAPS is a tool developed for this purpose. It distinguishes…
The paper presents complexity results and performance guaranties for a family of approximation algorithms for an optimisation problem arising in software testing and manufacturing. The problem is formulated as a partitioning of a set where…
The problem of packing a system of particles as densely as possible is foundational in the field of discrete geometry and is a powerful model in the material and biological sciences. As packing problems retreat from the reach of solution by…
Consider a set $P$ of $n$ points in $\mathbb{R}^d$. In the discrete median line segment problem, the objective is to find a line segment bounded by a pair of points in $P$ such that the sum of the Euclidean distances from $P$ to the line…
Finding a minimum-weight strongly connected spanning subgraph of an edge-weighted directed graph is equivalent to the weighted version of the well-known strong connectivity augmentation problem. This problem is NP-hard, and a simple…
Cyclotomic fast Fourier transforms (CFFTs) are efficient implementations of discrete Fourier transforms over finite fields, which have widespread applications in cryptography and error control codes. They are of great interest because of…
Structural relationships among proteins are important in the study of their evolution as well as in drug design and development. The protein 3D structure has been shown to be effective with respect to classifying proteins. Prior work has…
An influential result by Dor, Halperin, and Zwick (FOCS 1996, SICOMP 2000) implies an algorithm that can compute approximate shortest paths for all vertex pairs in $\tilde{O}(n^{2+O\left(\frac{1}{k}\right )})$ time, ensuring that the output…
Many problems in static program analysis can be modeled as the context-free language (CFL) reachability problem on directed labeled graphs. The CFL reachability problem can be generally solved in time $O(n^3)$, where $n$ is the number of…
Due to its many applications, \emph{curve simplification} is a long-studied problem in computational geometry and adjacent disciplines, such as graphics, geographical information science, etc. Given a polygonal curve $P$ with $n$ vertices,…
We prove that computing a shortest monotone path to the optimum of a linear program over a simple polytope is NP-hard, thus resolving a 2022 open question of De Loera, Kafer, and Sanit\`a. As a consequence, finding a shortest sequence of…
The minimum-weight $2$-edge-connected spanning subgraph (2-ECSS) problem is a natural generalization of the well-studied minimum-weight spanning tree (MST) problem, and it has received considerable attention in the area of network design.…
We show by reduction from the Orthogonal Vectors problem that algorithms with strongly subquadratic running time cannot approximate the Fr\'echet distance between curves better than a factor $3$ unless SETH fails. We show that similar…
We study two fundamental problems dealing with curves in the plane, namely, the nearest-neighbor problem and the center problem. Let $\mathcal{C}$ be a set of $n$ polygonal curves, each of size $m$. In the nearest-neighbor problem, the goal…
Computing the similarity between two protein structures is a crucial task in molecular biology, and has been extensively investigated. Many protein structure comparison methods can be modeled as maximum clique problems in specific k-partite…
Pairwise compatibility measure (CM) is a key component in solving the jigsaw puzzle problem (JPP) and many of its recently proposed variants. With the rapid rise of deep neural networks (DNNs), a trade-off between performance (i.e.,…
The Fr\'echet distance provides a natural and intuitive measure for the popular task of computing the similarity of two (polygonal) curves. While a simple algorithm computes it in near-quadratic time, a strongly subquadratic algorithm…
The Minimum Consistent Subset (MCS) problem arises naturally in the context of supervised clustering and instance selection. In supervised clustering, one aims to infer a meaningful partitioning of data using a small labeled subset.…