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The machinery of computing vacuum expectation values of a time-ordered sequence of position operators of the simple harmonic oscillator is already well established. It rests on a Wick theorem, which enables one to decompose such a quantity…

Quantum Physics · Physics 2023-01-02 Shridhar Vinayak

The chemical master equation (CME) is frequently used in systems biology to quantify the effects of stochastic fluctuations that arise due to biomolecular species with low copy numbers. The CME is a system of ordinary differential equations…

Quantitative Methods · Quantitative Biology 2017-10-25 Ankit Gupta , Jan Mikelson , Mustafa Khammash

For finite size Markov chains, the Donsker-Varadhan theory fully describes the large deviations of the time averaged empirical measure. We are interested in the extension of the Donsker-Varadhan theory for a large size non-equilibrium…

Probability · Mathematics 2024-05-06 Thierry Bodineau , Benoit Dagallier

The Stochastic Liouville-von Neumann (SLN) equation describes the dynamics of an open quantum system reduced density matrix coupled to a non-Markovian harmonic environment. The interaction with the environment is represented by complex…

Quantum Physics · Physics 2021-02-19 Daniel Matos , Matthew A Lane , Ian J Ford , Lev Kantorovich

We describe a new method of calculation of generic multi-loop master integrals based on the numerical solution of systems of difference equations in one variable. We show algorithms for the construction of the systems using…

High Energy Physics - Phenomenology · Physics 2009-07-09 S. Laporta

For Markov processes evolving on multiple time-scales a combination of large component scalings and averaging of rapid fluctuations can lead to useful limits for model approximation. A general approach to proving a law of large numbers to a…

Probability · Mathematics 2020-12-29 Lea Popovic

Stochastic reaction-diffusion models can be analytically studied on complex networks using the linear noise approximation. This is illustrated through the use of a specific stochastic model, which displays traveling waves in its…

Statistical Mechanics · Physics 2015-06-16 Malbor Asllani , Tommaso Biancalani , Duccio Fanelli , Alan J. McKane

A general formalism is developed to construct a Markov chain model that converges to a one-dimensional map in the infinite population limit. Stochastic fluctuations are therefore internal to the system and not externally specified. For…

Statistical Mechanics · Physics 2014-09-15 Joseph D. Challenger , Duccio Fanelli , Alan J. McKane

The quantum dynamics of correlated fermionic or bosonic many-body systems following external excitation can be successfully studied using nonequilibrium Green functions (NEGF) or reduced density matrix methods. Approximations are introduced…

Strongly Correlated Electrons · Physics 2023-12-27 Erik Schroedter , Björn Jakob Wurst , Jan-Philip Joost , Michael Bonitz

An expansion scheme is developed for Feynman diagrams describing the production of one massive and one massless particle near the threshold. As an example application, we compute the correlators of heavy-light quark currents, (\bar b…

High Energy Physics - Phenomenology · Physics 2009-11-07 Andrzej Czarnecki , Kirill Melnikov

Single-cell studies often show significant phenotypic variability due to the stochastic nature of intra-cellular biochemical reactions. When the numbers of molecules, e.g., transcription factors and regulatory enzymes, are in low abundance,…

Quantitative Methods · Quantitative Biology 2015-06-17 Kyung Hyuk Kim , Hong Qian , Herbert M. Sauro

In this paper we consider systems of weakly interacting particles driven by colored noise in a bistable potential, and we study the effect of the correlation time of the noise on the bifurcation diagram for the equilibrium states. We…

Numerical Analysis · Mathematics 2020-04-27 S. N. Gomes , G. A. Pavliotis , U. Vaes

The optimized expansion is used to formulate a systematic approximation scheme to the probability distribution of a stochastic system. The first order approximation for the one-dimensional system driven by noise in an anharmonic potential…

Statistical Mechanics · Physics 2009-04-15 Anna Okopińska

In this paper we provide an alternative method to compute correlation functions in the in-in formalism, with a modified set of Feynman rules to compute loop corrections. The diagrammatic expansion is based on an iterative solution of the…

High Energy Physics - Theory · Physics 2014-01-17 Marcello Musso

Numerical simulations based on electronic structure calculations are finding ever growing applications in many areas of physics. A major limiting factor is however the cubic scaling of the algorithms used. Building on previous work [F. R.…

Materials Science · Physics 2009-11-11 Florian R. Krajewski , Michele Parrinello

Many-body perturbation theory (MBPT) is widely used in quantum physics, chemistry, and materials science. At the heart of MBPT is the Feynman diagrammatic expansion, which is, simply speaking, an elegant way of organizing the…

Mathematical Physics · Physics 2018-09-11 Lin Lin , Michael Lindsey

We solve two problems related to the fluctuations of time-integrated functionals of Markov diffusions, used in physics to model nonequilibrium systems. In the first we derive and illustrate the appropriate boundary conditions on the…

Statistical Mechanics · Physics 2023-02-01 Johan du Buisson

Stochastic reaction networks are a fundamental model to describe interactions between species where random fluctuations are relevant. The master equation provides the evolution of the probability distribution across the discrete state space…

Molecular Networks · Quantitative Biology 2021-06-15 Tabea Waizmann , Luca Bortolussi , Andrea Vandin , Mirco Tribastone

We use tensor network techniques to obtain high order perturbative diagrammatic expansions for the quantum many-body problem at very high precision. The approach is based on a tensor train parsimonious representation of the sum of all…

Chemical and biological networks can describe a wide variety of processes, from gene regulatory networks to biochemical oscillations. Modeled by chemical master equations, these processes are inherently stochastic, as fluctuations dominate…

Statistical Mechanics · Physics 2025-12-23 Schuyler B. Nicholson , Luis Pedro García-Pintos
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