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DL_MONTE is an open source, general-purpose software package for performing Monte Carlo simulations. It includes a wide variety of force fields and MC techniques, and thus is applicable to a broad range of problems in molecular simulation.…

Cosmological simulations are fundamental tools to study structure formation and the astrophysics of evolving structures, in particular clusters of galaxies. While hydrodynamical simulations cannot sample efficiently large volumes and…

Cosmology and Nongalactic Astrophysics · Physics 2018-08-01 Fabio Zandanel , Mattia Fornasa , Francisco Prada , Thomas H. Reiprich , Florian Pacaud , Anatoly Klypin

We present a new galaxy survey simulation package, which combines the power of Markov Chain Monte Carlo (MCMC) sampling with a robust and adaptable model of galaxy evolution. The aim of this code is to aid in the characterization and study…

Instrumentation and Methods for Astrophysics · Physics 2016-11-25 Noah Kurinsky , Anna Sajina

We present $\it{CosmoPower}$, a suite of neural cosmological power spectrum emulators providing orders-of-magnitude acceleration for parameter estimation from two-point statistics analyses of Large-Scale Structure (LSS) and Cosmic Microwave…

Cosmology and Nongalactic Astrophysics · Physics 2022-02-23 A. Spurio Mancini , D. Piras , J. Alsing , B. Joachimi , M. P. Hobson

We present nanoCMB, a minimal but accurate calculator for the unlensed CMB temperature and polarisation angular power spectra ($C_\ell^{TT}$, $C_\ell^{EE}$, $C_\ell^{TE}$) of flat $\Lambda$CDM cosmologies. Written in $\sim$1400 lines of…

Cosmology and Nongalactic Astrophysics · Physics 2026-03-02 Adam Moss

Powerful new observational facilities will come online over the next decade, enabling a number of discovery opportunities in the "Cosmic Frontier", which targets understanding of the physics of the early universe, dark matter and dark…

We present an efficient parametric model checking (PMC) technique for the analysis of software performability, i.e., of the performance and dependability properties of software systems. The new PMC technique works by automatically…

Logic in Computer Science · Computer Science 2022-10-25 Xinwei Fang , Radu Calinescu , Simos Gerasimou , Faisal Alhwikem

Obtaining the set of cosmological parameters consistent with observational data is an important exercise in current cosmological research. It involves finding the global maximum of the likelihood function in the multi-dimensional parameter…

Cosmology and Nongalactic Astrophysics · Physics 2012-07-03 Jayanti Prasad , Tarun Souradeep

Atmospheric studies of exoplanets and brown dwarfs are a cutting-edge and rapidly evolving area of astrophysics research. Calculating models of exoplanet or brown dwarf spectra requires knowledge of the wavelength-dependent absorption of…

Instrumentation and Methods for Astrophysics · Physics 2024-10-22 Arnav Agrawal , Ryan J. MacDonald

Cosmic Reionization On Computers (CROC) is a long-term program of numerical simulations of cosmic reionization. Its goal is to model fully self-consistently (albeit not necessarily from the first principles) all relevant physics, from…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-19 Nickolay Y. Gnedin

EFTCAMB/EFTCosmoMC are publicly available patches to the CAMB/CosmoMC codes implementing the effective field theory approach to single scalar field dark energy and modified gravity models. With the present numerical notes we provide a guide…

Instrumentation and Methods for Astrophysics · Physics 2017-09-28 Bin Hu , Marco Raveri , Noemi Frusciante , Alessandra Silvestri

emcee is a Python library implementing a class of affine-invariant ensemble samplers for Markov chain Monte Carlo (MCMC). This package has been widely applied to probabilistic modeling problems in astrophysics where it was originally…

Cosmological simulations provide a wealth of data in the form of point clouds and directed trees. A crucial goal is to extract insights from this data that shed light on the nature and composition of the Universe. In this paper we introduce…

We present a comprehensive comparison of different Markov Chain Monte Carlo (MCMC) sampling methods, evaluating their performance on both standard test problems and cosmological parameter estimation. Our analysis includes traditional…

Cosmology and Nongalactic Astrophysics · Physics 2025-02-28 Denitsa Staicova

KMCLib is a general framework for lattice kinetic Monte Carlo (KMC) simulations. The program can handle simulations of the diffusion and reaction of millions of particles in one, two, or three dimensions, and is designed to be easily…

Computational Physics · Physics 2014-05-07 Mikael Leetmaa , Natalia V. Skorodumova

Inference in cosmology often starts with noisy observations of random fields on the celestial sphere, such as maps of the microwave background radiation, continuous maps of cosmic structure in different wavelengths, or maps of point tracers…

Cosmology and Nongalactic Astrophysics · Physics 2026-02-06 E. Sellentin , A. Loureiro , L. Whiteway , J. S. Lafaurie , S. T. Balan , M. Olamaie , A. H. Jaffe , A. F. Heavens

flowMC is a Python library for accelerated Markov Chain Monte Carlo (MCMC) leveraging deep generative modeling. It is built on top of the machine learning libraries JAX and Flax. At its core, flowMC uses a local sampler and a learnable…

Instrumentation and Methods for Astrophysics · Physics 2022-11-14 Kaze W. K. Wong , Marylou Gabrié , Daniel Foreman-Mackey

The Imaging Computational Microscope (ICM) is a suite of computational tools for automated analysis of functional imaging data that runs under the cross-platform MATLAB environment (The Mathworks, Inc.). ICM uses a semi-supervised…

Neurons and Cognition · Quantitative Biology 2015-02-26 E. Paxon Frady , William B. Kristan

We introduce Preconditioned Monte Carlo (PMC), a novel Monte Carlo method for Bayesian inference that facilitates efficient sampling of probability distributions with non-trivial geometry. PMC utilises a Normalising Flow (NF) in order to…

Instrumentation and Methods for Astrophysics · Physics 2022-08-24 Minas Karamanis , Florian Beutler , John A. Peacock , David Nabergoj , Uros Seljak

In this work is presented the software OGCOSMO. This program was written using high level design methodology (HLDM), that is based on the use of very high level (VHL) programing language as main, and the use of the intermediate level (IL)…

Computational Engineering, Finance, and Science · Computer Science 2012-07-17 Eduardo dos Santos Pereira , Oswaldo D. Miranda
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