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Predicting protein interactions is one of the more interesting challenges of the post-genomic era. Many algorithms address this problem as a binary classification problem: given two proteins represented as two vectors of features, predict…

Molecular Networks · Quantitative Biology 2011-11-01 Ossnat Bar-Shira , Gal Chechik

We consider the problem of selecting $k$ seed nodes in a network to maximize the minimum probability of activation under an independent cascade beginning at these seeds. The motivation is to promote fairness by ensuring that even the least…

Social and Information Networks · Computer Science 2025-02-20 Dennis Robert Windham , Caroline J. Wendt , Alex Crane , Madelyn J Warr , Freda Shi , Sorelle A. Friedler , Blair D. Sullivan , Aaron Clauset

Stratified digraphs are popular models for feedforward neural networks. However, computation of their path homologies has been limited to low dimensions due to high computational complexity. A recursive algorithm is proposed to compute…

Computational Geometry · Computer Science 2024-12-12 Zhengtong Zhu , Zhiyi Chi

We introduce a new distributed algorithm for aligning graphs or finding substructures within a given graph. It is based on the cavity method and is used to study the maximum-clique and the graph-alignment problems in random graphs. The…

Quantitative Methods · Quantitative Biology 2010-04-02 S. Bradde , A. Braunstein , H. Mahmoudi , F. Tria , M. Weigt , R. Zecchina

One of the most important combinatorial optimization problems is graph coloring. There are several variations of this problem involving additional constraints either on vertices or edges. They constitute models for real applications, such…

Data Structures and Algorithms · Computer Science 2016-06-17 Rosiane de Freitas , Bruno Dias , Nelson Maculan , Jayme Szwarcfiter

We consider problems to make a given bidirected graph strongly connected with minimum cardinality of additional signs or additional arcs. For the former problem, we show the minimum number of additional signs and give a linear-time…

Discrete Mathematics · Computer Science 2017-09-05 Tatsuya Matsuoka , Shun Sato

The broadcast scheduling problem asks how a multihop network of broadcast transceivers operating on a shared medium may share the medium in such a way that communication over the entire network is possible. This can be naturally modeled as…

Data Structures and Algorithms · Computer Science 2012-10-12 Shaun N. Joseph , Lisa C. DiPippo

In the Colored Bin Packing problem a set of items with varying weights and colors must be packed into bins of uniform weight limit such that no two items of the same color may be packed adjacently within a bin. We solve this problem for the…

Data Structures and Algorithms · Computer Science 2015-11-17 Hamza Alsarhan , Davin Chia , Ananya Christman , Shannia Fu , Yanfeng Jin

We propose the first deep learning approach for exemplar-based local colorization. Given a reference color image, our convolutional neural network directly maps a grayscale image to an output colorized image. Rather than using hand-crafted…

Computer Vision and Pattern Recognition · Computer Science 2018-07-24 Mingming He , Dongdong Chen , Jing Liao , Pedro V. Sander , Lu Yuan

Despite recent algorithmic advances, we still lack principled ways to leverage the well-documented rescaling symmetries in ReLU neural network parameters. While two properly rescaled weights implement the same function, the training…

Machine Learning · Statistics 2026-02-24 Arthur Lebeurrier , Titouan Vayer , Rémi Gribonval

Scatterplot selection is an effective approach to represent essential portions of multidimensional data in a limited display space. Various metrics for evaluation of scatterplots such as scagnostics have been presented and applied to…

Human-Computer Interaction · Computer Science 2020-09-17 Takayuki Itoh , Asuka Nakabayashi , Mariko Hagita

We consider the problem of consistently matching multiple sets of elements to each other, which is a common task in fields such as computer vision. To solve the underlying NP-hard objective, existing methods often relax or approximate it,…

Machine Learning · Statistics 2019-07-19 Da Tang , Tony Jebara

In this paper, we consider the bandwidth-delay-hop constrained routing problem in large-scaled software defined networks. A number of demands, each of which specifies a source vertex and a sink vertex, are required to route in a given…

Networking and Internet Architecture · Computer Science 2019-02-28 Chenyang Xu , Liangde Tao , Huajingling Wu , Deshi Ye , Guochuan Zhang

We provide a polynomial-time algorithm for b-Coloring on graphs of constant clique-width. This unifies and extends nearly all previously known polynomial time results on graph classes, and answers open questions posed by Campos and Silva…

Data Structures and Algorithms · Computer Science 2022-07-20 Lars Jaffke , Paloma T. Lima , Daniel Lokshtanov

As in many other scientific domains, we face a fundamental problem when using machine learning to identify proteins from mass spectrometry data: large ground truth datasets mapping inputs to correct outputs are extremely difficult to…

Probabilistic sampling methods have become very popular to solve single-shot path planning problems. Rapidly-exploring Random Trees (RRTs) in particular have been shown to be very efficient in solving high dimensional problems. Even though…

Artificial Intelligence · Computer Science 2009-12-03 Nicolas A. Barriga , Mauricio Araya-López , Mauricio Solar

This thesis surveys the research in patch-based synthesis and algorithms for finding correspondences between small local regions of images. We additionally explore a large kind of applications of this new fast randomized matching technique.…

Graphics · Computer Science 2020-05-14 Hadi Abdi Khojasteh

Scheduling wireless links for simultaneous activation in such a way that all transmissions are successfully decoded at the receivers and moreover network capacity is maximized is a computationally hard problem. Usually it is tackled by…

Networking and Internet Architecture · Computer Science 2016-03-15 Fabio R. J. Vieira , José F. de Rezende , Valmir C. Barbosa

In single channel wireless networks, concurrent transmission at different links may interfere with each other. To improve system throughput, a scheduling algorithm is necessary to choose a subset of links at each time slot for data…

Combinatorics · Mathematics 2012-10-30 Ali Ghiasian , Behnaz Omoomi , Hossein Saidi

Color coding is an algorithmic technique used in parameterized complexity theory to detect "small" structures inside graphs. The idea is to derandomize algorithms that first randomly color a graph and then search for an easily-detectable,…

Computational Complexity · Computer Science 2019-01-14 Max Bannach , Till Tantau
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