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A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

In the age of social computing, finding interesting network patterns or motifs is significant and critical for various areas such as decision intelligence, intrusion detection, medical diagnosis, social network analysis, fake news…

Social and Information Networks · Computer Science 2022-04-07 Shuo Yu , Feng Xia , Yuchen Sun , Tao Tang , Xiaoran Yan , Ivan Lee

Network motifs can capture basic interaction patterns and inform the functional properties of networks. However, real-world complex systems often have multiple types of relationships, which cannot be represented by a monolayer network. The…

Physics and Society · Physics 2019-03-06 Lu Zhong , Qingpeng Zhang , Dong Yang , Guanrong Chen , Shi Yu

The mining of graphs in terms of their local substructure is a well-established methodology to analyze networks. It was hypothesized that motifs - subgraph patterns which appear significantly more often than expected at random - play a key…

Social and Information Networks · Computer Science 2015-01-16 Marco Winkler , Joerg Reichardt

Network motifs are recurrent, small-scale patterns of interactions observed frequently in a system. They shed light on the interplay between the topology and the dynamics of complex networks across various domains. In this work, we focus on…

Social and Information Networks · Computer Science 2023-11-08 Quintino Francesco Lotito , Federico Musciotto , Federico Battiston , Alberto Montresor

The structure of complex networks can be characterized by counting and analyzing network motifs. Motifs are small subgraphs that occur repeatedly in a network, such as triangles or chains. Recent work has generalized motifs to temporal and…

Physics and Society · Physics 2022-01-04 Timothy LaRock , Ingo Scholtes , Tina Eliassi-Rad

Nowadays, software has become a complex piece of work that may be beyond our control. Understanding how software evolves over time plays an important role in controlling software development processes. Recently, a few researchers found the…

Software Engineering · Computer Science 2008-08-26 Yutao Ma , Keqing He , Jing Liu

The structure of the network can be described by motifs, which are subgraphs that often repeat themselves. In order to understand the structure of network motifs, it is of great importance to study subgraphs from the perspective of…

General Topology · Mathematics 2019-10-25 Ruize Gao , Ying Zhao

Exploring statistics of locally connected subgraph patterns (also known as network motifs) has helped researchers better understand the structure and function of biological and online social networks (OSNs). Nowadays the massive size of…

Social and Information Networks · Computer Science 2014-03-28 Pinghui Wang , John C. S. Lui , Bruno Ribeiro , Don Towsley , Junzhou Zhao , Xiaohong Guan

Interaction networks are of central importance in post-genomic molecular biology, with increasing amounts of data becoming available by high-throughput methods. Examples are gene regulatory networks or protein interaction maps. The main…

Statistical Mechanics · Physics 2009-11-10 Johannes Berg , Michael Lässig

The study of motifs in networks can help researchers uncover links between the structure and function of networks in biology, sociology, economics, and many other areas. Empirical studies of networks have identified feedback loops,…

Physics and Society · Physics 2021-05-12 Alice C. Schwarze , Mason A. Porter

The graph structure is a commonly used data storage mode, and it turns out that the low-dimensional embedded representation of nodes in the graph is extremely useful in various typical tasks, such as node classification, link prediction ,…

Social and Information Networks · Computer Science 2020-08-03 Xing Li , Wei Wei , Xiangnan Feng , Xue Liu , Zhiming Zheng

Frequent and structurally related subgraphs, also known as network motifs, are valuable features of many graph datasets. However, the high computational complexity of identifying motif sets in arbitrary datasets (motif mining) has limited…

Machine Learning · Computer Science 2022-06-08 Carlos Oliver , Dexiong Chen , Vincent Mallet , Pericles Philippopoulos , Karsten Borgwardt

Network science can offer fundamental insights into the structural and functional properties of complex systems. For example, it is widely known that neuronal circuits tend to organize into basic functional topological modules, called…

Adaptation and Self-Organizing Systems · Physics 2022-08-03 Matteo Zambra , Alberto Testolin , Amos Maritan

Physical and functional constraints on biological networks lead to complex topological patterns across multiple scales in their organization. A particular type of higher-order network feature that has received considerable interest is…

Quantitative Methods · Quantitative Biology 2024-10-15 Alexis Bénichou , Jean-Baptiste Masson , Christian L. Vestergaard

Characterizing motif (i.e., locally connected subgraph patterns) statistics is important for understanding complex networks such as online social networks and communication networks. Previous work made the strong assumption that the graph…

Social and Information Networks · Computer Science 2015-02-25 Pinghui Wang , John C. S. Lui , Don Towsley

Multiplex networks are a powerful framework for representing systems with multiple types of interactions among a common set of entities. Understanding their structure requires statistical tools capturing higher-order cross-layer…

Statistics Theory · Mathematics 2026-03-30 Karl Sawaya , Sofia Olhede

Real-world networks exhibit prominent hierarchical and modular structures, with various subgraphs as building blocks. Most existing studies simply consider distinct subgraphs as motifs and use only their numbers to characterize the…

Social and Information Networks · Computer Science 2019-12-17 Qi Xuan , Jinhuan Wang , Minghao Zhao , Junkun Yuan , Chenbo Fu , Zhongyuan Ruan , Guanrong Chen

Link prediction requires predicting which new links are likely to appear in a graph. Being able to predict unseen links with good accuracy has important applications in several domains such as social media, security, transportation, and…

Social and Information Networks · Computer Science 2020-06-08 Ghadeer Abuoda , Gianmarco De Francisci Morales , Ashraf Aboulnaga

Many real-world phenomena are best represented as interaction networks with dynamic structures (e.g., transaction networks, social networks, traffic networks). Interaction networks capture flow of data which is transferred between their…

Social and Information Networks · Computer Science 2018-10-22 Chrysanthi Kosyfaki , Nikos Mamoulis , Evaggelia Pitoura , Panayiotis Tsaparas