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One of the focus areas of modern scientific research is to reveal mysteries related to genes and their interactions. The dynamic interactions between genes can be encoded into a gene regulatory network (GRN), which can be used to gain…

Optimization and Control · Mathematics 2020-07-16 Atte Aalto , Lauri Viitasaari , Pauliina Ilmonen , Laurent Mombaerts , Jorge Goncalves

A unique feature of Recurrent Neural Networks (RNNs) is that it incrementally processes input sequences. In this research, we aim to uncover the inherent generalization properties, i.e., inductive bias, of RNNs with respect to how…

Machine Learning · Computer Science 2023-05-17 Taiga Ishii , Ryo Ueda , Yusuke Miyao

Recurrent neural networks (RNNs) have been extraordinarily successful for prediction with sequential data. To tackle highly variable and noisy real-world data, we introduce Particle Filter Recurrent Neural Networks (PF-RNNs), a new RNN…

Machine Learning · Computer Science 2019-12-03 Xiao Ma , Peter Karkus , David Hsu , Wee Sun Lee

Gene regulatory networks (GRNs) control cellular function and decision making during tissue development and homeostasis. Mathematical tools based on dynamical systems theory are often used to model these networks, but the size and…

Molecular Networks · Quantitative Biology 2018-03-16 Edgar Herrera-Delgado , Ruben Perez-Carrasco , James Briscoe , Peter Sollich

Training deep recurrent neural network (RNN) architectures is complicated due to the increased network complexity. This disrupts the learning of higher order abstracts using deep RNN. In case of feed-forward networks training deep…

Computation and Language · Computer Science 2018-08-07 Murali Karthick Baskar , Martin Karafiat , Lukas Burget , Karel Vesely , Frantisek Grezl , Jan Honza Cernocky

Convolutional neural network (CNN) and recurrent neural network (RNN) are two popular architectures used in text classification. Traditional methods to combine the strengths of the two networks rely on streamlining them or concatenating…

Computation and Language · Computer Science 2020-06-30 Shengfei Lyu , Jiaqi Liu

Gene regulatory networks (GRNs) define the regulatory relationships among molecules such as transcription factors, chromatin remodelers, and target genes. GRNs play a critical role in diverse biological processes, including development,…

Molecular Networks · Quantitative Biology 2026-02-24 Junha Shin , Spencer Halberg-Spencer , Yuda Liu , Suvojit Hazra , Erika Da-Inn Lee , Sushmita Roy

Recurrent neural networks have gained widespread use in modeling sequential data. Learning long-term dependencies using these models remains difficult though, due to exploding or vanishing gradients. In this paper, we draw connections…

Machine Learning · Statistics 2019-02-27 Bo Chang , Minmin Chen , Eldad Haber , Ed H. Chi

The increasing penetration of renewable energy sources introduces significant variability and uncertainty in modern power systems, making accurate state prediction critical for reliable grid operation. Conventional forecasting methods often…

Machine Learning · Computer Science 2025-04-01 Dhruv Suri , Mohak Mangal

We investigate time-dependent data analysis from the perspective of recurrent kernel machines, from which models with hidden units and gated memory cells arise naturally. By considering dynamic gating of the memory cell, a model closely…

Machine Learning · Statistics 2019-10-11 Kevin J Liang , Guoyin Wang , Yitong Li , Ricardo Henao , Lawrence Carin

Classical neural network approximation results take the form: for every function $f$ and every error tolerance $\epsilon > 0$, one constructs a neural network whose architecture and weights depend on $\epsilon$. This paper introduces a…

Neural and Evolutionary Computing · Computer Science 2025-11-20 Clemens Hutter , Valentin Abadie , Helmut Bölcskei

Recurrent neural networks (RNNs) have been widely used for processing sequential data. However, RNNs are commonly difficult to train due to the well-known gradient vanishing and exploding problems and hard to learn long-term patterns. Long…

Computer Vision and Pattern Recognition · Computer Science 2019-10-15 Shuai Li , Wanqing Li , Chris Cook , Ce Zhu , Yanbo Gao

Kalman filtering can provide an optimal estimation of the system state from noisy observation data. This algorithm's performance depends on the accuracy of system modeling and noise statistical characteristics, which are usually challenging…

Systems and Control · Electrical Eng. & Systems 2025-04-18 Xun Xiao , Junbo Tie , Jinyue Zhao , Ziqi Wang , Yuan Li , Qiang Dou , Lei Wang

Graph Neural Network (GNN) is an emerging technique for graph-based learning tasks such as node classification. In this work, we reveal the vulnerability of GNN to the imbalance of node labels. Traditional solutions for imbalanced…

Machine Learning · Computer Science 2022-02-08 Xiaohe Li , Lijie Wen , Yawen Deng , Fuli Feng , Xuming Hu , Lei Wang , Zide Fan

Recommender systems objectives can be broadly characterized as modeling user preferences over short-or long-term time horizon. A large body of previous research studied long-term recommendation through dimensionality reduction techniques…

Information Retrieval · Computer Science 2018-07-25 Kiewan Villatel , Elena Smirnova , Jérémie Mary , Philippe Preux

The cubature Kalman filter (CKF), while theoretically rigorous for nonlinear estimation, often suffers performance degradation due to model-environment mismatches in practice. To address this limitation, we propose CKFNet-a hybrid…

Signal Processing · Electrical Eng. & Systems 2025-08-14 Jinhui Hu , Haiquan Zhao , Yi Peng

We propose a novel deep neural network (DNN) based approximation architecture to learn estimates of measurements. We detail an algorithm that enables training of the DNN. The DNN estimator only uses measurements, if and when they are…

Machine Learning · Computer Science 2022-09-13 Shivangi Agarwal , Sanjit K. Kaul , Saket Anand , P. B. Sujit

Linear recurrent neural networks, such as State Space Models (SSMs) and Linear Recurrent Units (LRUs), have recently shown state-of-the-art performance on long sequence modelling benchmarks. Despite their success, their empirical…

Machine Learning · Computer Science 2024-10-08 Kai Biegun , Rares Dolga , Jake Cunningham , David Barber

In this paper, we present an effective deep prediction framework based on robust recurrent neural networks (RNNs) to predict the likely therapeutic classes of medications a patient is taking, given a sequence of diagnostic billing codes in…

Machine Learning · Computer Science 2020-01-29 Deyin Liu , Lin Wu , Xue Li

In this paper, we present a simple approach to train Generative Adversarial Networks (GANs) in order to avoid a \textit {mode collapse} issue. Implicit models such as GANs tend to generate better samples compared to explicit models that are…

Computer Vision and Pattern Recognition · Computer Science 2021-02-09 Seyed Mehdi Iranmanesh , Nasser M. Nasrabadi
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