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We present two algorithms for computing the geodesic distance between phylogenetic trees in tree space, as introduced by Billera, Holmes, and Vogtmann (2001). We show that the possible combinatorial types of shortest paths between two trees…

Combinatorics · Mathematics 2011-06-08 Megan Owen

We present simple and practical $(1+\eps)$-approximation algorithm for the Frechet distance between curves. To analyze this algorithm we introduce a new realistic family of curves, $c$-packed curves, that is closed under simplification. We…

Computational Geometry · Computer Science 2012-01-31 Anne Driemel , Sariel Har-Peled , Carola Wenk

This paper presents a unified computational framework for the estimation of distances, geodesics and barycenters of merge trees. We extend recent work on the edit distance [106] and introduce a new metric, called the Wasserstein distance…

Graphics · Computer Science 2021-09-21 Mathieu Pont , Jules Vidal , Julie Delon , Julien Tierny

It has been found that many networks display community structure -- groups of vertices within which connections are dense but between which they are sparser -- and highly sensitive computer algorithms have in recent years been developed for…

Statistical Mechanics · Physics 2009-11-10 M. E. J. Newman

Geodesic distance serves as a reliable means of measuring distance in nonlinear spaces, and such nonlinear manifolds are prevalent in the current multimodal learning. In these scenarios, some samples may exhibit high similarity, yet they…

Computer Vision and Pattern Recognition · Computer Science 2025-05-19 Shibin Mei , Hang Wang , Bingbing Ni

Algorithms for the computation of the forward and inverse geodesic problems for an ellipsoid of revolution are derived. These are accurate to better than 15 nm when applied to the terrestrial ellipsoids. The solutions of other problems…

Geophysics · Physics 2015-03-18 Charles F. F. Karney

Recent years have witnessed a tremendous growth using topological summaries, especially the persistence diagrams (encoding the so-called persistent homology) for analyzing complex shapes. Intuitively, persistent homology maps a potentially…

Computational Geometry · Computer Science 2021-04-19 Samantha Chen , Yusu Wang

In this paper, we present a new metric distance for comparing two large graphs to find similarities and differences between them based on one of the most important graph structural properties, which is Node Adjacency Information, for all…

Discrete Mathematics · Computer Science 2022-06-14 Arefe Alikhani , Farzad Didehvar

We introduce new distance measures for comparing straight-line embedded graphs based on the Fr\'echet distance and the weak Fr\'echet distance. These graph distances are defined using continuous mappings and thus take the combinatorial…

Computational Geometry · Computer Science 2019-09-12 Hugo A. Akitaya , Maike Buchin , Bernhard Kilgus , Stef Sijben , Carola Wenk

Geodesic distance, commonly called shortest path length, has proved useful in a great variety of disciplines. It has been playing a significant role in search engine at present and so attracted considerable attention at the last few…

Combinatorics · Mathematics 2019-09-17 Xudong Luo , Fei Ma , Wentao Xu

Geometric graphs appear in many real-world data sets, such as road networks, sensor networks, and molecules. We investigate the notion of distance between embedded graphs and present a metric to measure the distance between two geometric…

Data Structures and Algorithms · Computer Science 2024-07-15 Erin Wolf Chambers , Elizabeth Munch , Sarah Percival , Xinyi Wang

The theory of geodesic regression aims to find a geodesic curve which is an optimal fit to a given set of data. In this article we restrict ourselves to the Riemannian manifold of positive definite operators (matrices) on a Hilbert space of…

Mathematical Physics · Physics 2020-05-29 Frank Hansen

Approximating distance is one of the key challenge in a facility location problem. Several algorithms have been proposed, however, none of them focused on estimating distance between two concave regions. In this work, we present an…

Optimization and Control · Mathematics 2018-06-12 Ruilin Ouyang , Dinghao Ma , M. S. Morshed , Md. Noor-E-Alam

In physics, two systems that radically differ at short scales can exhibit strikingly similar macroscopic behaviour: they are part of the same long-distance universality class. Here we apply this viewpoint to geometry and initiate a program…

High Energy Physics - Theory · Physics 2023-11-22 Adam R. Brown , Michael H. Freedman , Henry W. Lin , Leonard Susskind

In algorithms for finite metric spaces, it is common to assume that the distance between two points can be computed in constant time, and complexity bounds are expressed only in terms of the number of points of the metric space. We…

Computational Geometry · Computer Science 2019-01-28 Michael Kerber , Arnur Nigmetov

Graphs are interesting structures: extremely useful to depict real-life problems, extremely easy to understand given a sketch, extremely complicated to represent formally, extremely complicated to compare. Phylogeny is the study of the…

Data Structures and Algorithms · Computer Science 2019-01-18 Bernardo Lopo Tavares

We derive various inequalities involving the intersection number of the curves contained in geodesics and tight geodesics in the curve graph. While there already exist such inequalities on tight geodesics, our method applies in the setting…

Geometric Topology · Mathematics 2016-03-14 Yohsuke Watanabe

In many singular metric spaces, the regularity of a shortest-length curve is unknown. Algebraic varieties, or more generally sets defined by finitely many polynomial or real analytic equalities or inequalities, all locally partition into…

Differential Geometry · Mathematics 2023-01-30 Chengcheng Yang

Distance measuring is a very important task in digital geometry and digital image processing. Due to our natural approach to geometry we think of the set of points that are equally far from a given point as a Euclidean circle. Using the…

Metric Geometry · Mathematics 2010-06-18 Janos Farkas , Szabolcs Bajak , Benedek Nagy

To improve our understanding of connected systems, different tools derived from statistics, signal processing, information theory and statistical physics have been developed in the last decade. Here, we will focus on the graph comparison…

Physics and Society · Physics 2018-04-23 Johann H. Martínez , Mario Chavez