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Motivation: Bioinformatics is faced with a variety of problems that require human involvement. Tasks like genome annotation, image analysis, knowledge-base construction and protein structure determination all benefit from human input. In…

Quantitative Methods · Quantitative Biology 2013-07-01 Benjamin M. Good , Andrew I. Su

The article introduces a new method for applying Quantum Clustering to graph structures. Quantum Clustering (QC) is a novel density-based unsupervised learning method that determines cluster centers by constructing a potential function. In…

Machine Learning · Computer Science 2025-01-17 Zhe Wang , ZhiJie He , Ding Liu

When some 'entities' are related by the 'features' they share they are amenable to a bipartite network representation. Plant-pollinator ecological communities, co-authorship of scientific papers, customers and purchases, or answers in a…

Social and Information Networks · Computer Science 2020-10-14 Ignacio Tamarit , María Pereda , José A. Cuesta

The reproducibility of scientific experiment is vital for the advancement of disciplines based on previous work. To achieve this goal, many researchers focus on complex methodology and self-invented tools which have difficulty in practical…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-12-29 Feng Zhao , Xingzhi Niu , Shao-Lun Huang , Lin Zhang

As organizations increasingly migrate their applications to the cloud, the optimization of microservices architectures becomes imperative for achieving sustainability goals. Nonetheless, sustainable deployments may increase costs and…

Software Engineering · Computer Science 2024-09-24 Vittorio Cortellessa , Daniele Di Pompeo , Michele Tucci

Cloud computing (cloud computing) is a kind of distributed computing, referring to the network "cloud" will be a huge data calculation and processing program into countless small programs, and then, through the system composed of multiple…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-16 Yufu Wang , Mingwei Zhu , Jiaqiang Yuan , Guanghui Wang , Hong Zhou

In the field of crowd counting research, many recent deep learning based methods have demonstrated robust capabilities for accurately estimating crowd sizes. However, the enhancement in their performance often arises from an increase in the…

Computer Vision and Pattern Recognition · Computer Science 2025-09-22 Lei Chen , Xinghang Gao , Fei Chao , Xiang Chang , Chih Min Lin , Xingen Gao , Shaopeng Lin , Hongyi Zhang , Juqiang Lin

We review clustering as an analysis tool and the underlying concepts from an introductory perspective. What is clustering and how can clusterings be realised programmatically? How can data be represented and prepared for a clustering task?…

Machine Learning · Computer Science 2022-12-05 Jan-Oliver Felix Kapp-Joswig , Bettina G. Keller

A timeline is presented which shows the stages involved in converting a bioinformatics software application from a set of standalone algorithms through to a simple web based tool then to a web based portal harnessing Grid technologies and…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-12-04 John Allen , David Scott , Malcolm Illingworth , Bartek Dobrzelecki , Davy Virdee , Steve Thorn , Sara Knott

Recent efforts to design and develop Cloud technologies focus on defining novel methods, policies and mechanisms for efficiently managing Cloud infrastructures. One key challenge potential Cloud customers have before renting resources is to…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-02-11 Dr. Rahul Malhotra , Prince Jain

This paper introduces H-STREAM, a big stream/data processing pipelines evaluation engine that proposes stream processing operators as micro-services to support the analysis and visualisation of Big Data streams stemming from IoT (Internet…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-10 Genoveva Vargas-Solar , Javier A. Espinosa-Oviedo

High-performance scientific applications require more and more compute power. The concurrent use of multiple distributed compute resources is vital for making scientific progress. The resulting distributed system, a so-called Jungle…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-03-05 Niels Drost , Jason Maassen , Maarten A. J. van Meersbergen , Henri E. Bal , F. Inti Pelupessy , Simon Portegies Zwart , Michael Kliphuis , Henk A. Dijkstra , Frank J. Seinstra

While working in collaborative team elsewhere sometimes the federated (huge) data are from heterogeneous cloud vendors. It is not only about the data privacy concern but also about how can those federated data can be querying from cloud…

Databases · Computer Science 2018-05-04 Diyah Puspitaningrum

Cloud computing provides ubiquitous and on-demand access to vast reconfigurable resources that can meet any computational need. Many service models are available, but the Infrastructure as a Service (IaaS) model is particularly suited to…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-29 Gianluca Longoni , Ryan LaMothe , Jeremy Teuton , Mark Greaves , Nicole Nichols , William Smith

I present a new GPU implementation of the wavelet tree data structure. It includes binary rank and select support structures that provide at least 10 times higher throughput of binary rank and select queries than the best publicly available…

Data Structures and Algorithms · Computer Science 2025-05-07 Marco Franzreb , Martin Burtscher , Stephan Rudolph

This paper builds the clustering model of measures of market microstructure features which are popular in predicting stock returns. In a 10-second time-frequency, we study the clustering structure of different measures to find out the best…

Statistical Finance · Quantitative Finance 2021-12-28 Liao Zhu , Ningning Sun , Martin T. Wells

Considering the diverse nature of real-world distributed applications that makes it hard to identify a representative subset of distributed benchmarks, we focus on their underlying distributed algorithms. We present and characterize a new…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-10-11 Suyash Gupta , V. Krishna Nandivada

1. Citizen and community-science (CS) datasets have great potential for estimating interannual patterns of population change given the large volumes of data collected globally every year. Yet, the flexible protocols that enable many CS…

Edge computing is an emerging technology which places computing at the edge of the network to provide an ultra-low latency. Computation offloading, a paradigm that migrates computing from mobile devices to remote servers, can now use the…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-02-13 Li Lin , Peng Li , Jinbo Xiong , Mingwei Lin

Cluster computing was introduced to replace the superiority of super computers. Cluster computing is able to overcome the problems that cannot be effectively dealt with supercomputers. In this paper, we are going to evaluate the performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-15 Cinantya Paramita , Fauzi Adi Rafrastara , Usman Sudibyo , R. I. W. Agung Wibowo