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We present four constructions of inversion sequences, and use them to compute the enumeration sequences of 24 classes of pattern-avoiding inversion sequences. This completes the enumeration of inversion sequences avoiding one or two…

Combinatorics · Mathematics 2025-11-25 Benjamin Testart

A mixed graph can be seen as a type of digraph containing some edges (two opposite arcs). Here we introduce the concept of sequence mixed graphs, which is a generalization of both sequence graphs and iterated line digraphs. These structures…

Combinatorics · Mathematics 2016-10-13 C. Dalfó , M. A. Fiol , N. López

We study a new class of networks, generated by sequences of letters taken from a finite alphabet consisting of $m$ letters (corresponding to $m$ types of nodes) and a fixed set of connectivity rules. Recently, it was shown how a binary…

Disordered Systems and Neural Networks · Physics 2009-02-17 Jie Sun , Takashi Nishikawa , Daniel ben-Avraham

We present a novel method for mapping unrestricted text to knowledge graph entities by framing the task as a sequence-to-sequence problem. Specifically, given the encoded state of an input text, our decoder directly predicts paths in the…

Computation and Language · Computer Science 2019-04-08 Victor Prokhorov , Mohammad Taher Pilehvar , Nigel Collier

The vast amounts of data used in social, business or traffic networks, biology and other natural sciences are often managed in graph-based data sets, consisting of a few thousand up to billions and trillions of vertices and edges,…

Databases · Computer Science 2021-10-22 Matthias Hauck , Ismail Oukid , Holger Fröning

A contraction sequence of a graph consists of iteratively merging two of its vertices until only one vertex remains. The recently introduced twin-width graph invariant is based on contraction sequences. More precisely, if one puts red edges…

Data Structures and Algorithms · Computer Science 2022-06-02 Édouard Bonnet , Eun Jung Kim , Amadeus Reinald , Stéphan Thomassé

We construct a graph G such that any embedding of G into R^{3} contains a nonsplit link of two components, where at least one of the components is a nontrivial knot. Further, for any m < n we produce a graph H so that every embedding of H…

Geometric Topology · Mathematics 2007-05-23 Thomas Fleming

We prove that every graph $G$ on $n$ vertices with no isolated vertices contains an induced subgraph of size at least $n/10000$ with all degrees odd. This solves an old and well-known conjecture in graph theory.

Combinatorics · Mathematics 2021-04-02 Asaf Ferber , Michael Krivelevich

Degree-based graph construction is an ubiquitous problem in network modeling, ranging from social sciences to chemical compounds and biochemical reaction networks in the cell. This problem includes existence, enumeration, exhaustive…

Combinatorics · Mathematics 2009-08-27 Hyunju Kim , Zoltan Toroczkai , Péter L. Erdős , István Miklós , László Á. Székely

We develop a structural approach to simultaneous embeddability in temporal sequences of graphs, inspired by graph minor theory. Our main result is a classification theorem for 2-connected temporal sequences: we identify five obstruction…

Combinatorics · Mathematics 2025-04-02 Johannes Carmesin , Will J. Turner

We consider intrinsic linking and knotting in the context of directed graphs. We construct an example of a directed graph that contains a consistently oriented knotted cycle in every embedding. We also construct examples of intrinsically…

Geometric Topology · Mathematics 2017-12-29 Thomas Fleming , Joel Foisy

Recently, there has been an increasing interest in (supervised) learning with graph data, especially using graph neural networks. However, the development of meaningful benchmark datasets and standardized evaluation procedures is lagging,…

Machine Learning · Computer Science 2020-07-20 Christopher Morris , Nils M. Kriege , Franka Bause , Kristian Kersting , Petra Mutzel , Marion Neumann

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

The problem of enumerating all connected induced subgraphs of a given order $k$ from a given graph arises in many practical applications: bioinformatics, information retrieval, processor design,to name a few. The upper bound on the number…

Data Structures and Algorithms · Computer Science 2023-03-16 Shanshan Wang , Chenglong Xiao , Emmanuel Casseau

The construction of large-scale, low-latency networks becomes difficult as the number of nodes increases. In general, the way to construct a theoretically optimal solution is unknown. However, it is known that some methods can construct…

Combinatorics · Mathematics 2016-09-01 Ryosuke Mizuno , Yawara Ishida

Networks or graphs are widely used across the sciences to represent relationships of many kinds. igraph (https://igraph.org) is a general-purpose software library for graph construction, analysis, and visualisation, combining fast and…

Let $v(F)$ denote the number of vertices in a fixed connected pattern graph $F$. We show an infinite family of patterns $F$ such that the existence of a subgraph isomorphic to $F$ is expressible by a first-order sentence of quantifier depth…

Computational Complexity · Computer Science 2018-02-08 Oleg Verbitsky , Maksim Zhukovskii

A graph G on n vertices is said to be extendable if G can be modified to form a new graph H on more than n vertices, while preserving the degrees of the vertices common to G and H. The added vertices all have the same degree and we define…

Combinatorics · Mathematics 2018-03-09 Ghurumuruhan Ganesan

We introduce a variant of the well-studied sum choice number of graphs, which we call the interactive sum choice number. In this variant, we request colours to be added to the vertices' colour-lists one at a time, and so we are able to make…

Discrete Mathematics · Computer Science 2021-01-07 Marthe Bonamy , Kitty Meeks

Given two distributions F and G on the nonnegative integers we propose an algorithm to construct in- and out-degree sequences from samples of i.i.d. observations from F and G, respectively, that with high probability will be graphical, that…

Probability · Mathematics 2012-07-12 Ningyuan Chen , Mariana Olvera-Cravioto