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Rooted phylogenetic networks allow biologists to represent evolutionary relationships between present-day species by revealing ancestral speciation and hybridization events. A convenient and well-studied class of such networks are…

Populations and Evolution · Quantitative Biology 2026-02-02 Qiang Zhang , Mike Steel

We propose a dynamical system that captures changes to the network centrality of nodes as external interest in those nodes vary. We derive this system by adding time-dependent teleportation to the PageRank score. The result is not a single…

Social and Information Networks · Computer Science 2012-11-20 David F. Gleich , Ryan A. Rossi

We explore link prediction as a proxy for automatically surfacing documents from existing literature that might be topically or contextually relevant to a new document. Our model uses transformer-based graph embeddings to encode the meaning…

Social and Information Networks · Computer Science 2024-03-29 William Watson , Lawrence Yong

Many real-world networks are intrinsically directed. Such networks include activation of genes, hyperlinks on the internet, and the network of followers on Twitter among many others. The challenge, however, is to create a network model that…

Social and Information Networks · Computer Science 2022-04-15 Jesse Michel , Sushruth Reddy , Rikhav Shah , Sandeep Silwal , Ramis Movassagh

We study random labelings of graphs conditioned on a small number (typically one or two) peaks, i.e., local maxima. We show that the boundaries of level sets of a random labeling of a square with a single peak have dimension 2, in a…

Probability · Mathematics 2017-02-24 Krzysztof Burdzy , Soumik Pal

Local convergence techniques have become a key methodology to study sparse random graphs. However, convergence of many random graph properties does not directly follow from local convergence. A notable, and important, such random graph…

Probability · Mathematics 2025-10-07 Remco van der Hofstad

Mixing patterns in large self-organizing networks, such as the Internet, the World Wide Web, social and biological networks are often characterized by degree-degree dependencies between neighbouring nodes. In this paper we propose a new way…

Physics and Society · Physics 2015-06-04 Nelly Litvak , Remco van der Hofstad

Tree-based methods are powerful nonparametric techniques in statistics and machine learning. However, their effectiveness, particularly in finite-sample settings, is not fully understood. Recent applications have revealed their surprising…

Statistics Theory · Mathematics 2024-10-04 Hengrui Luo , Meng Li

Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…

Probability · Mathematics 2023-01-10 François Bienvenu , Amaury Lambert , Mike Steel

We show that every connected graph can be approximated by a normal tree, up to some arbitrarily small error phrased in terms of neighbourhoods around its ends. The existence of such approximate normal trees has consequences of both…

Combinatorics · Mathematics 2021-02-05 Jan Kurkofka , Ruben Melcher , Max Pitz

Popular graph neural networks are shallow models, despite the success of very deep architectures in other application domains of deep learning. This reduces the modeling capacity and leaves models unable to capture long-range relationships.…

Machine Learning · Computer Science 2022-07-05 Andreas Roth , Thomas Liebig

We present a comprehensive analysis of algebraic methods for controlling the stationary distribution of PageRank-like random walkers. Building upon existing literature, we compile and extend results regarding both structural control…

Social and Information Networks · Computer Science 2025-08-26 Gonzalo Contreras-Aso , Regino Criado , Miguel Romance

We study the properties of the giant connected component in random graphs with arbitrary degree distribution. We concentrate on the degree-degree correlations. We show that the adjoining nodes in the giant connected component are correlated…

Statistical Mechanics · Physics 2010-05-11 Piotr Bialas , Andrzej K. Oleś

Neural message passing algorithms for semi-supervised classification on graphs have recently achieved great success. However, for classifying a node these methods only consider nodes that are a few propagation steps away and the size of…

Machine Learning · Computer Science 2022-04-06 Johannes Gasteiger , Aleksandar Bojchevski , Stephan Günnemann

We analyze a class of spatial random spanning trees built on a realization of a homogeneous Poisson point process of the plane. This tree has a simple radial structure with the origin as its root. We first use stochastic geometry arguments…

Probability · Mathematics 2007-05-23 Francois Baccelli , Charles Bordenave

Phylogenetic networks provide a more general description of evolutionary relationships than rooted phylogenetic trees. One way to produce a phylogenetic network is to randomly place $k$ arcs between the edges of a rooted binary phylogenetic…

Populations and Evolution · Quantitative Biology 2025-03-19 Michael Fuchs , Mike Steel , Qiang Zhang

We derive the finite size dependence of the clustering coefficient of scale-free random graphs generated by the configuration model with degree distribution exponent $2<\gamma<3$. Degree heterogeneity increases the presence of triangles in…

Disordered Systems and Neural Networks · Physics 2015-06-05 Pol Colomer-de-Simon , Marian Boguna

The spread of infectious disease in a human community or the proliferation of fake news on social media can be modeled as a randomly growing tree-shaped graph. The history of the random growth process is often unobserved but contains…

Probability · Mathematics 2021-01-15 Harry Crane , Min Xu

In this paper we introduce a model of spatial network growth in which nodes are placed at randomly selected locations on a unit square in $\mathbb{R}^2$, forming new connections to old nodes subject to the constraint that edges do not…

Physics and Society · Physics 2016-02-12 Garvin Haslett , Seth Bullock , Markus Brede

PageRank is a ranking of the web pages that measures how often a given web page is visited by a random surfer on the web graph, for a simple model of web surfing. It seems realistic that PageRank may also have an influence on the behavior…

Probability · Mathematics 2007-12-05 Marianne Akian , Stephane Gaubert , Laure Ninove