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Symmetries in a Hamiltonian play an important role in quantum physics because they correspond directly with conserved quantities of the related system. In this paper, we propose quantum algorithms capable of testing whether a Hamiltonian…

Quantum Physics · Physics 2023-12-29 Margarite L. LaBorde , Mark M. Wilde

Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of…

Machine Learning · Computer Science 2019-02-27 Tatsuya Shiraishi , Tam Le , Hisashi Kashima , Makoto Yamada

Topological data analysis is becoming increasingly relevant to support the analysis of unstructured data sets. A common assumption in data analysis is that the data set is a sample---not necessarily a uniform one---of some high-dimensional…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Markus Banagl , Filip Sadlo , Heike Leitte

Computational topology has recently known an important development toward data analysis, giving birth to the field of topological data analysis. Topological persistence, or persistent homology, appears as a fundamental tool in this field.…

Statistics Theory · Mathematics 2013-05-28 Frédéric Chazal , Marc Glisse , Catherine Labruère , Bertrand Michel

Persistent homology has emerged as a popular technique for the topological simplification of big data, including biomolecular data. Multidimensional persistence bears considerable promise to bridge the gap between geometry and topology.…

Biomolecules · Quantitative Biology 2014-12-25 Kelin Xia , Guo-Wei Wei

Solving eigenproblem of the Laplacian matrix of a fully connected weighted graph has wide applications in data science, machine learning, and image processing, etc. However, this is very challenging because it involves expensive matrix…

Quantum Physics · Physics 2022-05-31 Hai-Ling Liu , Su-Juan Qin , Lin-Chun Wan , Chao-Hua Yu , Shi-Jie Pan , Fei Gao , Qiao-Yan Wen

Persistent homology is an important methodology in topological data analysis which adapts theory from algebraic topology to data settings. Computing persistent homology produces persistence diagrams, which have been successfully used in…

Machine Learning · Statistics 2026-01-13 Yueqi Cao , Anthea Monod

Spatial transcriptomics studies are becoming increasingly large and commonplace, necessitating simultaneous analysis of a large number of spatially resolved variables. Correspondingly, a diverse range of methodologies have been proposed to…

Quantitative Methods · Quantitative Biology 2025-09-09 James Boyle , Gregory Hamm , Eleanor Williams , Robin JG Hartman , Magnus Soderburg , Ian Henry , Michael Casey

Understanding topological features in networks is crucial for unravelling complex phenomena across fields such as neuroscience, condensed matter, and high-energy physics. However, identifying higher-order topological structures -- such as…

Non-Hermitian physics has emerged as a rich field of study, with applications ranging from $PT$-symmetry breaking and skin effects to non-Hermitian topological phase transitions. Yet most studies remain restricted to small-scale or…

Quantum Physics · Physics 2025-10-06 Xiao-Ming Zhang , Yukun Zhang , Wenhao He , Xiao Yuan

This paper presents a new clustering algorithm for space-time data based on the concepts of topological data analysis and in particular, persistent homology. Employing persistent homology - a flexible mathematical tool from algebraic…

Machine Learning · Statistics 2019-10-28 Umar Islambekov , Yulia Gel

HodgeRank generalizes ranking algorithms, e.g. Google PageRank, to rank alternatives based on real-world (often incomplete) data using graphs and discrete exterior calculus. It analyzes multipartite interactions on high-dimensional networks…

Quantum Physics · Physics 2025-06-26 Caesnan M. G. Leditto , Angus Southwell , Behnam Tonekaboni , Muhammad Usman , Kavan Modi

Persistent homology is a powerful tool for characterizing the topology of a data set at various geometric scales. When applied to the description of molecular structures, persistent homology can capture the multiscale geometric features and…

Quantitative Methods · Quantitative Biology 2018-07-31 Zixuan Cang , Guo-Wei Wei

Persistent Homology is a fairly new branch of Computational Topology which combines geometry and topology for an effective shape description of use in Pattern Recognition. In particular it registers through "Betti Numbers" the presence of…

Quantitative Methods · Quantitative Biology 2016-06-01 Massimo Ferri , Ivan Tomba , Andrea Visotti , Ignazio Stanganelli

We provide a quantum protocol to perform topological data analysis (TDA) via the distillation of quantum thermal states. Recent developments of quantum thermal state preparation algorithms reveal their characteristic scaling defined by…

Quantum Physics · Physics 2024-07-15 Stefano Scali , Chukwudubem Umeano , Oleksandr Kyriienko

Persistent homology is a technique recently developed in algebraic and computational topology well-suited to analysing structure in complex, high-dimensional data. In this paper, we exposit the theory of persistent homology from first…

Applications · Statistics 2016-11-30 Matthew Pietrosanu

We describe an approach to bounded-memory computation of persistent homology and betti barcodes, in which a computational state is maintained with updates introducing new edges to the underlying neighbourhood graph and percolating the…

Computational Geometry · Computer Science 2011-06-01 Mikael Vejdemo-Johansson

Persistent homology analysis provides means to capture the connectivity structure of data sets in various dimensions. On the mathematical level, by defining a metric between the objects that persistence attaches to data sets, we can…

Machine Learning · Computer Science 2019-06-12 Henri Riihimäki , José Licón-Saláiz

We characterize structures such as monotonicity, convexity, and modality in smooth regression curves using persistent homology. Persistent homology is a key tool in topological data analysis that detects higher-dimensional topological…

Algebraic Topology · Mathematics 2025-10-28 Satish Kumar , Subhra Sankar Dhar

High-dimensional datasets typically cluster around lower-dimensional manifolds but are also often marred by severe noise, obscuring the intrinsic geometry essential for downstream learning tasks. We present a quantum algorithm for…

Quantum Physics · Physics 2025-08-11 Nhat A. Nghiem , Tuan K. Do , Tzu-Chieh Wei , Trung V. Phan