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We propose a novel dynamic image reconstruction method from PET listmode data that could be particularly suited to tracking single or small numbers of cells. In contrast to conventional PET reconstruction our method combines the information…

Computer Vision and Pattern Recognition · Computer Science 2019-11-25 Bernhard Schmitzer , Klaus P. Schäfers , Benedikt Wirth

Imaging neuronal activity non-invasively in vivo is of tremendous interest, but current imaging techniques lack either functional contrast or necessary microscopic resolution. The retina is the only part of the central nervous system (CNS)…

To compensate for sensory processing delays, the visual system must make predictions to ensure timely and appropriate behaviors. Recent work has found predictive information about the stimulus in neural populations early in vision…

Neurons and Cognition · Quantitative Biology 2018-10-05 Audrey J. Sederberg , Jason N. MacLean , Stephanie E. Palmer

This work explores Liquid Time-Constant Networks (LTCs) and Closed-form Continuous-time Networks (CfCs) for modeling retinal ganglion cell activity in tiger salamanders across three datasets. Compared to a convolutional baseline and an…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Kacper Dobek , Daniel Jankowski , Krzysztof Krawiec

Cell tracking enables data extraction from time-lapse "cell movies" and promotes modeling biological processes at the single-cell level. We introduce a new fully automated computational strategy to track accurately cells across frames in…

Computer Vision and Pattern Recognition · Computer Science 2017-06-23 Athanasios D. Balomenos , Panagiotis Tsakanikas , Elias S. Manolakos

The human visual system has a hierarchical structure consisting of layers of processing, such as the retina, V1, V2, etc. Understanding the functional roles of these visual processing layers would help to integrate the psychophysiological…

Computer Vision and Pattern Recognition · Computer Science 2014-12-19 Honghao Shan , Garrison Cottrell

Zebrafish pretectal neurons exhibit specificities for large-field optic flow patterns associated with rotatory or translatory body motion. We investigate the hypothesis that these specificities reflect the input statistics of natural optic…

Neurons and Cognition · Quantitative Biology 2018-10-10 Gerrit A. Ecke , Fabian A. Mikulasch , Sebastian A. Bruijns , Thede Witschel , Aristides B. Arrenberg , Hanspeter A. Mallot

The spatial distribution of neuronal cells is an important requirement for achieving proper neuronal function in several parts of the nervous system of most animals. For instance, specific distribution of photoreceptors and related neuronal…

Neurons and Cognition · Quantitative Biology 2007-09-19 Luciano da Fontoura Costa , Fernando Rocha , Silene Maria Araujo de Lima

The human visual system is an intricate network of brain regions that enables us to recognize the world around us. Despite its abundant lateral and feedback connections, object processing is commonly viewed and studied as a feedforward…

Neurons and Cognition · Quantitative Biology 2019-10-09 Tim C Kietzmann , Courtney J Spoerer , Lynn Sörensen , Radoslaw M Cichy , Olaf Hauk , Nikolaus Kriegeskorte

Conventional cell tracking methods detect multiple cells in each frame (detection) and then associate the detection results in successive time-frames (association). Most cell tracking methods perform the association task independently from…

Computer Vision and Pattern Recognition · Computer Science 2020-02-27 Junya Hayashida , Kazuya Nishimura , Ryoma Bise

Several theories of early sensory processing suggest that it whitens sensory stimuli. Here, we test three key predictions of the whitening theory using recordings from 152 ganglion cells in salamander retina responding to natural movies. We…

Neurons and Cognition · Quantitative Biology 2017-03-21 Reza Abbasi-Asl , Cengiz Pehlevan , Bin Yu , Dmitri B. Chklovskii

The accurate tracking of live cells using video microscopy recordings remains a challenging task for popular state-of-the-art image processing based object tracking methods. In recent years, several existing and new applications have…

Image and Video Processing · Electrical Eng. & Systems 2025-02-03 Gergely Szabó , Paolo Bonaiuti , Andrea Ciliberto , András Horváth

We study the problem of sparse nonlinear model recovery of high dimensional compositional functions. Our study is motivated by emerging opportunities in neuroscience to recover fine-grained models of biological neural circuits using…

Quantitative Methods · Quantitative Biology 2021-06-11 Dawna Bagherian , James Gornet , Jeremy Bernstein , Yu-Li Ni , Yisong Yue , Markus Meister

A main concern in cognitive neuroscience is to decode the overt neural spike train observations and infer latent representations under neural circuits. However, traditional methods entail strong prior on network structure and hardly meet…

Neurons and Cognition · Quantitative Biology 2019-11-22 Zhijie Chen , Junchi Yan , Longyuan Li , Xiaokang Yang

Real-time track tracking in high energy physics experiments at colliders running at high luminosity is very challenging for trigger systems. To perform pattern-recognition and track fitting in online trigger system, the artificial Retina…

Instrumentation and Detectors · Physics 2021-09-01 W. Deng , Z. Song , G. Huang , G. De Lentdecker , F. Robert , Y. Yang

We provide the first quantitative evidence for the deceleration of the Galactic bar from local stellar kinematics in agreement with dynamical friction by a typical dark matter halo. The kinematic response of the stellar disk to a…

Astrophysics of Galaxies · Physics 2023-08-04 Rimpei Chiba , Jennifer K. S. Friske , Ralph Schönrich

Examining locomotion has improved our basic understanding of motor control and aided in treating motor impairment. Mice and rats are the model system of choice for basic neuroscience studies of human disease. High frame rates are needed to…

Computer Vision and Pattern Recognition · Computer Science 2018-09-05 Omid Haji Maghsoudi , Annie Vahedipour , Benjamin Robertson , Andrew Spence

Neural circuits in the retina divide the incoming visual scene into more than a dozen distinct representations that are sent on to central brain areas, such as the lateral geniculate nucleus and the superior colliculus. The retina can be…

Neurons and Cognition · Quantitative Biology 2018-06-11 Samuel Chiquita

We characterize the computation of motion in the fly visual system as a mapping from the high dimensional space of signals in the retinal photodetector array to the probability of generating an action potential in a motion sensitive neuron.…

Neurons and Cognition · Quantitative Biology 2007-05-23 William Bialek , Rob R. de Ruyter van Steveninck

Redundancies and correlations in the responses of sensory neurons seem to waste neural resources but can carry cues about structured stimuli and may help the brain to correct for response errors. To assess how the retina negotiates this…

Neurons and Cognition · Quantitative Biology 2014-03-05 K. D. Simmons , J. S. Prentice , G. Tkacik , J. Homann , H. K. Yee , S. E. Palmer , P. C. Nelson , V. Balasubramanian