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In this paper, we revisit the much studied problem of Pattern Matching with Swaps (Swap Matching problem, for short). We first present a graph-theoretic model, which opens a new and so far unexplored avenue to solve the problem. Then, using…

Data Structures and Algorithms · Computer Science 2013-09-19 Pritom Ahmed , Costas S. Iliopoulos , A. S. M. Sohidull Islam , M. Sohel Rahman

In this paper we revisit the classical regular expression matching problem, namely, given a regular expression $R$ and a string $Q$, decide if $Q$ matches one of the strings specified by $R$. Let $m$ and $n$ be the length of $R$ and $Q$,…

Data Structures and Algorithms · Computer Science 2007-05-23 Philip Bille

Quantum computers have the potential of solving certain problems exponentially faster than classical computers. Recently, Harrow, Hassidim and Lloyd proposed a quantum algorithm for solving linear systems of equations: given an $N\times{N}$…

Quantum Physics · Physics 2014-02-19 Jian Pan , Yudong Cao , Xiwei Yao , Zhaokai Li , Chenyong Ju , Xinhua Peng , Sabre Kais , Jiangfeng Du

We consider the problem of preprocessing a text $T$ of length $n$ and a dictionary $\mathcal{D}$ in order to be able to efficiently answer queries $CountDistinct(i,j)$, that is, given $i$ and $j$ return the number of patterns from…

Longest common substring (LCS), longest palindrome substring (LPS), and Ulam distance (UL) are three fundamental string problems that can be classically solved in near linear time. In this work, we present sublinear time quantum algorithms…

Quantum Physics · Physics 2023-12-29 François Le Gall , Saeed Seddighin

The maximum bipartite matching problem is among the most fundamental and well-studied problems in combinatorial optimization. A beautiful and celebrated combinatorial algorithm of Hopcroft and Karp (1973) shows that maximum bipartite…

Data Structures and Algorithms · Computer Science 2023-12-21 Julia Chuzhoy , Sanjeev Khanna

In the pattern matching with $d$ wildcards problem one is given a text $T$ of length $n$ and a pattern $P$ of length $m$ that contains $d$ wildcard characters, each denoted by a special symbol $'?'$. A wildcard character matches any other…

Data Structures and Algorithms · Computer Science 2020-01-01 Shay Golan , Tsvi Kopelowitz , Ely Porat

Random graph matching refers to recovering the underlying vertex correspondence between two random graphs with correlated edges; a prominent example is when the two random graphs are given by Erd\H{o}s-R\'{e}nyi graphs $G(n,\frac{d}{n})$.…

Machine Learning · Statistics 2020-07-21 Jian Ding , Zongming Ma , Yihong Wu , Jiaming Xu

In this work, we consider the problem of pattern matching under the dynamic time warping (DTW) distance motivated by potential applications in the analysis of biological data produced by the third generation sequencing. To measure the DTW…

Data Structures and Algorithms · Computer Science 2022-09-01 Garance Gourdel , Anne Driemel , Pierre Peterlongo , Tatiana Starikovskaya

We present new algorithms for the problem of multiple string matching of gapped patterns, where a gapped pattern is a sequence of strings such that there is a gap of fixed length between each two consecutive strings. The problem has…

Data Structures and Algorithms · Computer Science 2014-07-08 Emanuele Giaquinta , Kimmo Fredriksson , Szymon Grabowski , Alexandru I. Tomescu , Esko Ukkonen

We investigate the problem of deterministic pattern matching in multiple streams. In this model, one symbol arrives at a time and is associated with one of s streaming texts. The task at each time step is to report if there is a new match…

Data Structures and Algorithms · Computer Science 2012-04-26 Raphael Clifford , Markus Jalsenius , Ely Porat , Benjamin Sach

The Permutation Pattern Matching problem asks, given two permutations $\sigma$ on $n$ elements and $\pi$, whether $\sigma$ admits a subsequence with the same relative order as $\pi$ (or, in the counting version, how many such subsequences…

Data Structures and Algorithms · Computer Science 2021-08-27 Pawel Gawrychowski , Mateusz Rzepecki

We study quantum algorithms on search trees of unknown structure, in a model where the tree can be discovered by local exploration. That is, we are given the root of the tree and access to a black box which, given a vertex $v$, outputs the…

Quantum Physics · Physics 2022-12-29 Andris Ambainis , Martins Kokainis

Inspired by random walk on graphs, diffusion map (DM) is a class of unsupervised machine learning that offers automatic identification of low-dimensional data structure hidden in a high-dimensional dataset. In recent years, among its many…

Quantum Physics · Physics 2021-11-24 Apimuk Sornsaeng , Ninnat Dangniam , Pantita Palittapongarnpim , Thiparat Chotibut

We consider the problem of querying a string (or, a database) of length $N$ bits to determine all the locations where a substring (query) of length $M$ appears either exactly or is within a Hamming distance of $K$ from the query. We assume…

Information Theory · Computer Science 2017-04-27 Nagaraj T. Janakiraman , Avinash Vem , Krishna R. Narayanan , Jean-Francois Chamberland

$k$-Clustering in $\mathbb{R}^d$ (e.g., $k$-median and $k$-means) is a fundamental machine learning problem. While near-linear time approximation algorithms were known in the classical setting for a dataset with cardinality $n$, it remains…

Quantum Physics · Physics 2023-06-06 Yecheng Xue , Xiaoyu Chen , Tongyang Li , Shaofeng H. -C. Jiang

Most problems in uncertainty quantification, despite its ubiquitousness in scientific computing, applied mathematics and data science, remain formidable on a classical computer. For uncertainties that arise in partial differential equations…

Quantum Physics · Physics 2022-09-29 Francois Golse , Shi Jin , Nana Liu

We introduce the natural notion of a matching frame in a $2$-dimensional string. A matching frame in a $2$-dimensional $n\times m$ string $M$, is a rectangle such that the strings written on the horizontal sides of the rectangle are…

Data Structures and Algorithms · Computer Science 2024-04-19 Itai Boneh , Dvir Fried , Shay Golan , Matan Kraus , Adrian Miclaus , Arseny Shur

Representing signals with sparse vectors has a wide range of applications that range from image and video coding to shape representation and health monitoring. In many applications with real-time requirements, or that deal with…

Quantum Physics · Physics 2022-08-09 Armando Bellante , Stefano Zanero

Pattern matching with wildcards is the problem of finding all factors of a text $t$ of length $n$ that match a pattern $x$ of length $m$, where wildcards (characters that match everything) may be present. In this paper we present a number…

Data Structures and Algorithms · Computer Science 2016-01-15 Carl Barton
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