English
Related papers

Related papers: Effective models of membranes from symmetry breaki…

200 papers

We present a model for the efficient simulation of generic bilayer membranes. Individual lipids are represented by one head- and two tail-beads. By means of simple pair potentials these robustly self-assemble to a fluid bilayer state over a…

Soft Condensed Matter · Physics 2009-11-11 Ira R. Cooke , Kurt Kremer , Markus Deserno

Fluid membranes endowed with tangent-plane order (TPO) such as tilt- and hexatic order afford unique soft matter systems for investigating the interplay between elasticity, shape, topology, and thermal fluctuations. Using the…

Soft Condensed Matter · Physics 2015-06-19 Jaya Kumar A. , Buddhapriya Chakrabarti , Yashodhan Hatwalne

Membrane phase-separation is a mechanism that biological membranes often use to locally concentrate specific lipid species in order to organize diverse membrane processes. Phase separation has also been explored as a tool for the design of…

Computational Physics · Physics 2020-06-26 Alexander Zhiliakov , Yifei Wang , Annalisa Quaini , Maxim Olshanskii , Sheereen Majd

Learning faithful graph representations as sets of vertex embeddings has become a fundamental intermediary step in a wide range of machine learning applications. The quality of the embeddings is usually determined by how well the geometry…

Machine Learning · Computer Science 2021-05-13 Federico López , Beatrice Pozzetti , Steve Trettel , Anna Wienhard

In this paper we present a phase classification of (effectively) two-dimensional non-Abelian nematics, obtained using the Hopf symmetry breaking formalism. In this formalism one exploits the underlying double symmetry which treats both…

Mesoscale and Nanoscale Physics · Physics 2008-02-25 C. J. M. Mathy , F. A. Bais

We numerically investigate the hydrodynamics and membrane dynamics of multicomponent vesicles in two strongly confined geometries. This serves as a simplified model for red blood cells undergoing large deformations while traversing narrow…

Soft Condensed Matter · Physics 2023-08-21 Ashley Gannon , Bryan Quaife , Y. -N. Young

The structure and dynamics of important biological quasi-two-dimensional systems, ranging from cytoskeletal gels to tissues, are controlled by nematic order, flow, defects and activity. Continuum hydrodynamic descriptions combined with…

Biological Physics · Physics 2024-12-03 Waleed Mirza , Alejandro Torres-Sánchez , Guillermo Vilanova , Marino Arroyo

When a ligand that is bound to an integral membrane receptor is pulled, the membrane and the underlying cytoskeleton can deform before either the membrane delaminates from the cytoskeleton or the ligand detaches from the receptor. If the…

Soft Condensed Matter · Physics 2015-05-18 S. Nowak , T. Chou

We present Monte Carlo simulations of an ultra coarse-grained lipid bilayer with different number of lipids on both leaflets. In the simulations, we employ a new method for measuring the elastic parameters of the membrane, including the…

Soft Condensed Matter · Physics 2025-05-20 Oded Farago

A theoretical model of a two-component fluid membrane containing lipids and two-state active inclusions is presented. Under strong inclusion activities the membrane can be unstable due to pump-driven undulation or aggregation of high…

Soft Condensed Matter · Physics 2009-11-10 Hsuan-Yi Chen

Phase separation in a complex fluid with lamellar order has been studied in the case of cold thermal fronts propagating diffusively from external walls. The velocity hydrodynamic modes are taken into account by coupling the…

Soft Condensed Matter · Physics 2011-05-18 G. Gonnella , A. Lamura , A. Tiribocchi

Cell blebs are protrusions of the cell membrane and can be instrumental for cell migration. We derive a continuum model for the mechanical and geometrical aspects of the onset of blebbing in terms of a force balance. It is abstract and…

Numerical Analysis · Mathematics 2020-03-03 Björn Stinner , Andreas Dedner , Adam Nixon

A phase field model for dealing with shape instabilities in fluid membrane vesicles is presented. This model takes into account the Canham-Helfrich bending energy with spontaneous curvature. A dynamic equation for the phase-field is also…

Soft Condensed Matter · Physics 2007-07-26 F. Campelo , A. Hernandez-Machado

Biological membranes are able to exhibit various morphology due to the fluidity of the lipid molecules within the monolayers. The shape transformation of membranes has been well described by the classical Helfrich theory, which consists…

Soft Condensed Matter · Physics 2023-02-24 Mei-Ting Wang , Rui Ma , Chen-Xu Wu

An integrated mechanical model for fiber-laden membranes is presented and representative predictions of relevance to cellulose ordering and orientation in the plant cell wall are presented. The model describes nematic liquid crystalline…

Biological Physics · Physics 2009-06-24 Y. K. Murugesan , A. D. Rey

We study the influence of quenched disorder on the two-dimensional melting behavior by using both video-microscopy of superparamagnetic colloidal particles and computer simulations of repulsive parallel dipoles. Quenched disorder is…

Soft Condensed Matter · Physics 2015-06-16 Sven Deutschländer , Tobias Kruppa , Hartmut Löwen , Georg Maret , Peter Keim

A stack of tensionless membranes with nonlinear curvature energy and vertical harmonic interaction is studied. At low temperatures, the system forms a lamellar phase. At a critical temperature, the stack disorders vertically in a…

Condensed Matter · Physics 2009-10-31 M. E. S. Borelli , H. Kleinert , Adriaan M. J. Schakel

Thermal fluctuations are important for amphiphilic bilayer membranes since typical bending stiffnesses can be a few $k_B T$. The rod-like constituent molecules are generically tilted with respect to the local normal for packing reasons. We…

Condensed Matter · Physics 2009-10-28 Thomas Powers , Philip Nelson

The finite element simulation of dynamic wetting phenomena, requiring the computation of flow in a domain confined by intersecting a liquid-fluid free surface and a liquid-solid interface, with the three-phase contact line moving across the…

Computational Physics · Physics 2012-02-20 J. E. Sprittles , Y. D. Shikhmurzaev

We consider two models of a compressible inviscid isentropic two-fluid flow. The first one describes the liquid-gas two-phase flow. The second one can describe the mixture of two fluids of different densities or the mixture of fluid and…

Analysis of PDEs · Mathematics 2019-05-01 Lizhi Ruan , Yuri Trakhinin