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Background: We study the statistical properties of fragment coverage in genome sequencing experiments. In an extension of the classic Lander-Waterman model, we consider the effect of the length distribution of fragments. We also introduce…

Genomics · Quantitative Biology 2010-05-03 Steven N. Evans , Valerie Hower , Lior Pachter

We give a characterization of equilibrium measures for $p$-capacities on the boundary of an infinite tree of arbitrary (finite) local degree. For $p=2$, this provides, in the special case of trees, a converse to a theorem of Benjamini and…

Classical Analysis and ODEs · Mathematics 2023-04-18 Nicola Arcozzi , Matteo Levi

Measuring the complexity of tree structures can be beneficial in areas that use tree data structures for storage, communication, and processing purposes. This complexity can then be used to compress tree data structures to their…

Information Theory · Computer Science 2023-09-19 Amirmohammad Farzaneh , Mihai-Alin Badiu , Justin P. Coon

Based on a general theory of descendant trees of finite p-groups and the virtual periodicity isomorphisms between the branches of a coclass subtree, the behavior of algebraic invariants of the tree vertices and their automorphism groups…

Group Theory · Mathematics 2018-02-12 Daniel C. Mayer

In this work, we study the color discrepancy of spanning trees in random graphs. We show that for the Erd\H{o}s-R\'enyi random graph $G(n,p)$ with $p$ above the connectivity threshold, the following holds with high probability: in every…

Combinatorics · Mathematics 2025-11-10 Wenchong Chen , Xiao-Chuan Liu , Xu Yang

We prove that every graph which admits a tree-decomposition into finite parts has a rooted tree-decomposition into finite parts that is linked, tight and componental. As an application, we obtain that every graph without half-grid minor has…

Combinatorics · Mathematics 2024-05-14 Sandra Albrechtsen , Raphael W. Jacobs , Paul Knappe , Max Pitz

Spanning trees of complete bipartite graphs exhibit a rich interaction between degree sequences and graph structure. In this paper, we obtain lower bounds on the number of isomorphism classes of spanning trees in $K_{a,b}, 2 \leq a \leq b$…

Combinatorics · Mathematics 2026-03-03 Peter Johnson , Shayne Nochumson

A branch-and-bound (BB) tree certifies a dual bound on the value of an integer program. In this work, we introduce the tree compression problem (TCP): Given a BB tree T that certifies a dual bound, can we obtain a smaller tree with the same…

Optimization and Control · Mathematics 2023-06-08 Gonzalo Muñoz , Joseph Paat , Álinson S. Xavier

We consider a random tree and introduce a metric in the space of trees to define the ``mean tree'' as the tree minimizing the average distance to the random tree. When the resulting metric space is compact we have laws of large numbers and…

Probability · Mathematics 2007-05-23 David Balding , Pablo A. Ferrari , Ricardo Fraiman , Mariela Sued

We examine a discrete random recursive tree growth process that, at each time step, either adds or deletes a node from the tree with probability $p$ and $1-p$, respectively. Node addition follows the usual uniform attachment model. For node…

Probability · Mathematics 2021-08-03 Arnold Saunders

An effective $p$-adic encoding of dendrograms is presented through an explicit embedding into the Bruhat-Tits tree for a $p$-adic number field. This field depends on the number of children of a vertex and is a finite extension of the field…

Discrete Mathematics · Computer Science 2010-05-18 Patrick Erik Bradley

This note presents a simple criterion for the tightness of stochastic fragmentation processes. Our work is motivated by an application to a fragmentation process derived from deleting edges in a conditioned Galton-Watson tree studied by…

Probability · Mathematics 2025-07-08 Gabriel Berzunza Ojeda , Cecilia Holmgren , Svante Janson

This paper studies increasing trees on $n$ labeled vertices, in which labels increase from the root to the leaves. It is known that the number of binary increasing trees coincides with the number of alternating permutations (Euler numbers).…

Combinatorics · Mathematics 2026-01-13 Medet Jumadildayev

Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…

Probability · Mathematics 2023-01-10 François Bienvenu , Amaury Lambert , Mike Steel

We consider the model of random trees introduced by Devroye [SIAM J. Comput. 28 (1999) 409-432]. The model encompasses many important randomized algorithms and data structures. The pieces of data (items) are stored in a randomized fashion…

Probability · Mathematics 2012-11-05 Nicolas Broutin , Cecilia Holmgren

We propose a modification to the random destruction of graphs: Given a finite network with a distinguished set of sources and targets, remove (cut) vertices at random, discarding components that do not contain a source node. We investigate…

Probability · Mathematics 2022-01-05 Fabian Burghart

We study a natural fragmentation process of the so-called stable tree introduced by Duquesne and Le Gall, which consists in removing the nodes of the tree according to a certain procedure that makes the fragmentation self-similar with…

Probability · Mathematics 2007-05-23 Gregory Marc Miermont

We consider the Erdos-Renyi random graph G(n,p) inside the critical window, where p = 1/n + lambda * n^{-4/3} for some lambda in R. We proved in a previous paper (arXiv:0903.4730) that considering the connected components of G(n,p) as a…

Probability · Mathematics 2010-03-30 L. Addario-Berry , N. Broutin , C. Goldschmidt

Forbidden characterizations may sometimes be the most natural way to describe families of graphs, and yet these characterizations are usually very hard to exploit for enumerative purposes. By building on the work of Gioan and Paul (2012)…

Combinatorics · Mathematics 2016-08-05 Maryam Bahrani , Jérémie Lumbroso

This is a survey article on trees, with a modest number of proofs to give a flavor of the way these topologies can be efficiently handled. Trees are defined in set-theorist fashion as partially ordered sets in which the elements below each…

General Topology · Mathematics 2007-05-23 Peter J. Nyikos