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The stochastic description of chemical reaction networks with the kinetic chemical master equation (CME) is important for studying biological cells, but it suffers from the curse of dimensionality: The amount of data to be stored grows…

Numerical Analysis · Mathematics 2024-08-02 Lukas Einkemmer , Julian Mangott , Martina Prugger

In this letter, we employ and design the expectation--conditional maximization either (ECME) algorithm, a generalisation of the EM algorithm, for solving the maximum likelihood direction finding problem of stochastic sources, which may be…

Signal Processing · Electrical Eng. & Systems 2025-08-05 Ming-yan Gong , Bin Lyu

In this article, we introduce a new method for discretizing micro-macro models of dilute polymeric fluids by integrating a finite element discretization for the macroscopic fluid dynamic equation with a deterministic variational particle…

Numerical Analysis · Mathematics 2025-07-24 Xuelian Bao , Chun Liu , Yiwei Wang

We study several Fokker-Planck equations arising from a stochastic chemical kinetic system modeling a gene regulatory network in biology. The densities solving the Fokker-Planck equations describe the joint distribution of the messenger RNA…

Numerical Analysis · Mathematics 2020-09-15 Pierre Degond , Maxime Herda , Sepideh Mirrahimi

Tailoring the performance of next-generation high entropy materials requires a deep understanding of the competition between entropy-driven random solid solution and enthalpy-driven chemical ordering. Investigating such order and disorder…

Materials Science · Physics 2026-03-24 Fanli Zhou , Hao Chen , Pengxiang Xu , Kai Yang , Zongrui Pei , Xianglin Liu

We illustrate a counter-intuitive effect of an additive stochastic force, which acts independently on each element of an ensemble of globally coupled oscillators. We show numerically and semi-analytically that a very small white noise is…

Adaptation and Self-Organizing Systems · Physics 2017-06-27 Pau Clusella , Antonio Politi

Some intriging connections between the properties of nonlinear noise driven systems and the nonlinear dynamics of a particular set of Hamilton's equation are discussed. A large class of Fokker-Planck Equations, like the Schr\"odinger…

chao-dyn · Physics 2009-10-22 Mark M. Millonas

From a mathematical perspective, the extraordinary properties of metamaterials are often reflected in the coefficients of the governing partial differential equations (PDEs). These coefficients may fall outside the assumptions of classical…

Numerical Analysis · Mathematics 2026-05-22 Eric T. Chung , Patrick Ciarlet , Xingguang Jin , Changqing Ye

Unlike macroscopic multistable mechanical systems such as snap bracelets or elastic shells that must be physically manipulated into various conformations, microscopic systems can undergo spontaneous conformation switching between…

Statistical Mechanics · Physics 2013-08-29 Ee Hou Yong , L. Mahadevan

We study the properties of large systems of globally coupled oscillators in the presence of noise. When the distribution of the natural frequencies of the oscillators is bimodal and its analytical continuation in the complex plane has only…

Statistical Mechanics · Physics 2020-04-22 Alessandro Campa

We study individual-based dynamics in finite populations, subject to randomly switching environmental conditions. These are inspired by models in which genes transition between on and off states, regulating underlying protein dynamics.…

Statistical Mechanics · Physics 2016-05-18 Peter G. Hufton , Yen Ting Lin , Tobias Galla , Alan J. McKane

In an experimental study of single enzyme reactions, it has been proposed that the rate constants of the enzymatic reactions fluctuate randomly, according to a given distribution. To quantify the uncertainty arising from random rate…

Quantitative Methods · Quantitative Biology 2012-02-07 Chia Ying Lee

We demonstrate the existence of noise-induced periodicity (coherence resonance) in both a discrete-time model and a continuous-time model of an excitable neuron. In particular, we show that the effects of noise added to the fast and slow…

Neurons and Cognition · Quantitative Biology 2009-11-10 Robert C. Hilborn , Rebecca J. Erwin

This paper presents a theoretical study on the influence of a discrete element in the nonlinear dynamics of a continuous mechanical system subject to randomness in the model parameters. This system is composed by an elastic bar, attached to…

Statistical Mechanics · Physics 2021-05-24 Americo Cunha , Rubens Sampaio

Configurational entropy (CE) and configurational complexity (CC) are recently popularized information theoretic measures used to study the stability of solitons. This paper examines their behavior for 2D and 3D lattice Ising Models, where…

Statistical Mechanics · Physics 2025-03-06 Damian R Sowinski , Sean Kelty , Gourab Ghoshal

The statistical behavior of a nonlinear system described by a mapping with phase rotation is studied. We use the Kolmogorov-Chapman equations for the multi-time probability distribution functions for investigation of dynamics under the…

Chaotic Dynamics · Physics 2007-05-23 V. V. Zverev

In inhomogeneous environments, the correct expression of the diffusive flux is often not given by the Fick's law $\Gamma = - D \nabla n $. The most general hydrodynamic equation modelling diffusion is indeed the Fokker-Planck Equation…

Plasma Physics · Physics 2009-03-18 F. Sattin

Penalized likelihood and quasi-likelihood methods dominate inference in high-dimensional linear mixed-effects models. Sampling-based Bayesian inference is less explored due to the computational bottlenecks introduced by the random effects…

Methodology · Statistics 2025-07-24 Sreya Sarkar , Kshitij Khare , Sanvesh Srivastava

Based on a Fokker-Planck description of external Ornstein-Uhlenbeck noise and cross-correlated noise processes driving a dynamical system we examine the interplay of the properties of noise processes and the dissipative characteristic of…

Statistical Mechanics · Physics 2009-11-07 Bidhan Chandra Bag , Suman Kumar Banik , Deb Shankar Ray

A notion of quantum multipole (in particular, dipole) noise is considered. Quantum dipole noise is an analogue of quantum white noise but it acts in a Fock space with indefinite metric. Quantum {\it white} noise describes the leading term…

Mathematical Physics · Physics 2007-05-23 A. N. Pechen , I. V. Volovich