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Topological data analysis (TDA) uses persistent homology to quantify loops and higher-dimensional holes in data, making it particularly relevant for examining the characteristics of images of cells in the field of cell biology. In the…

Methodology · Statistics 2024-05-06 Susan Glenn , Jessi Cisewski-Kehe , Jun Zhu , William M. Bement

Analytical description of propagation phenomena on random networks has flourished in recent years, yet more complex systems have mainly been studied through numerical means. In this paper, a mean-field description is used to coherently…

Statistical Mechanics · Physics 2010-10-08 Laurent Hébert-Dufresne , Pierre-André Noël , Vincent Marceau , Antoine Allard , Louis J. Dubé

The relation between thermodynamic phase transitions in classical systems and topology changes in their state space is discussed for systems in which equivalence of statistical ensembles does not hold. As an example, the spherical model…

Statistical Mechanics · Physics 2007-05-23 Michael Kastner

Within the context of topological data analysis, the problems of identifying topological significance and matching signals across datasets are important and useful inferential tasks in many applications. The limitation of existing solutions…

Algebraic Topology · Mathematics 2024-06-26 Inés García-Redondo , Anthea Monod , Anna Song

The goal of this paper is to generalize some of the existing toolkit of combinatorial algebraic topology in order to study the homology of abstract chain complexes. We define shellability of chain complexes in a similar way as for cell…

Algebraic Topology · Mathematics 2012-10-18 Gerrit Grenzebach , Björn Walker

We consider two relatively natural topologizations of the set of all cellular automata on a fixed alphabet. The first turns out to be rather pathological, in that the countable space becomes neither first-countable nor sequential. Also,…

Cellular Automata and Lattice Gases · Physics 2012-08-15 Ville Salo , Ilkka Törmä

We study the statistical properties of the sampled networks by a random walker. We compare topological properties of the sampled networks such as degree distribution, degree-degree correlation, and clustering coefficient with those of the…

Physics and Society · Physics 2009-11-13 Sooyeon Yoon , Sungmin Lee , Soon-Hyung Yook , Yup Kim

The structure of real-world networks is usually difficult to characterize owing to the variation of topological scales, the nondyadic complex interactions, and the fluctuations in the network. We aim to address these problems by introducing…

Social and Information Networks · Computer Science 2019-09-25 Quoc Hoan Tran , Van Tuan Vo , Yoshihiko Hasegawa

Analysis on fractals is a growing field, with hints of potential for widespread applicability across all of STEM. One of the most heavily researched type of fractals are the nested fractals, fractal shapes defined by virtue of being made of…

Mathematical Physics · Physics 2024-01-29 Petal B. Mokryn

Syntax connects words to each other in very specific ways. Two words are syntactically connected if they depend directly on each other. Syntactic connections usually happen within a sentence. Gathering all those connection across several…

Computation and Language · Computer Science 2025-03-11 Juan Soria-Postigo , Luis F Seoane

Random walks on networks are widely used to model stochastic processes such as search strategies, transportation problems or disease propagation. A prominent example of such process is the guiding of naive T cells by the lymph node conduits…

Social and Information Networks · Computer Science 2022-10-21 Solène Song , Malek Senoussi , Paul Escande , Paul Villoutreix

In-depth studies of sociotechnical systems are largely limited to single instances. Network surveys are expensive, and platforms vary in important ways, from interface design, to social norms, to historical contingencies. With single…

Social and Information Networks · Computer Science 2018-11-06 Abigail Z. Jacobs

Sensor Networks are inherently complex networks, and many of their associated problems require analysis of some of their global characteristics. These are primarily affected by the topology of the network. We present in this paper, a…

Networking and Internet Architecture · Computer Science 2011-07-01 Harish Chintakunta , Hamid Krim

Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth's surface; however, in modern contagions long-range edges -- for example, due to…

Adaptation and Self-Organizing Systems · Physics 2015-07-31 Dane Taylor , Florian Klimm , Heather A. Harrington , Miroslav Kramar , Konstantin Mischaikow , Mason A. Porter , Peter J. Mucha

We propose a homology theory for locally compact spaces with ends in which the ends play a special role. The approach is motivated by results for graphs with ends, where it has been highly successful. But it was unclear how the original…

Algebraic Topology · Mathematics 2011-05-26 Reinhard Diestel , Philipp Sprüssel

This paper concerns a theoretical approach that combines topological data analysis (TDA) and sheaf theory. Topological data analysis, a rising field in mathematics and computer science, concerns the shape of the data and has been proven…

Computer Vision and Pattern Recognition · Computer Science 2020-12-04 Chuan-Shen Hu , Yu-Min Chung

Real data is often given as a point cloud, i.e. a finite set of points with pairwise distances between them. An important problem is to detect the topological shape of data --- for example, to approximate a point cloud by a low-dimensional…

Algebraic Topology · Mathematics 2018-10-09 Sara Kalisnik Verovsek , Vitaliy Kurlin , Davorin Lesnik

Cell biologists study in parallel the morphology of cells with the regulation mechanisms that modify this morphology. Such studies are complicated by the inherent heterogeneity present in the cell population. It remains difficult to define…

Quantitative Methods · Quantitative Biology 2025-12-23 Yossi Bokor Bleile , Pooja Yadav , Patrice Koehl , Florian Rehfeldt

In this work we introduce a statistical framework in order to analyze the spatial redundancy in natural images. This notion of spatial redundancy must be defined locally and thus we give some examples of functions (auto-similarity and…

Computer Vision and Pattern Recognition · Computer Science 2019-04-16 De Bortoli Valentin , Desolneux Agnès , Galerne Bruno , Leclaire Arthur

Assume that a finite set of points is randomly sampled from a subspace of a metric space. Recent advances in computational topology have provided several approaches to recovering the geometric and topological properties of the underlying…

Algebraic Topology · Mathematics 2021-01-29 Peter Bubenik , Peter T. Kim