Related papers: Aber-OWL: a framework for ontology-based data acce…
The ever-increasing amount of data in biomedical research, and in cancer research in particular, needs to be managed to support efficient data access, exchange and integration. Existing software infrastructures, such caGrid, support access…
End users of recent biomedical information systems are often unaware of the storage structure and access mechanisms of the underlying data sources and can require simplified mechanisms for writing domain specific complex queries. This…
Gene Ontology (GO) is the most important resource for gene function annotation. It provides a way to unify biological knowledge across different species via a dynamic and controlled vocabulary. GO is now widely represented in the Semantic…
As todays world grows with the technology on the other hand it seems to be small with the World Wide Web. With the use of Internet more and more information can be search from the web. When Users fires a query they want relevancy in…
Bio-medical ontologies can contain a large number of concepts. Often many of these concepts are very similar to each other, and similar or identical to concepts found in other bio-medical databases. This presents both a challenge and…
The Ontology Lookup Service (OLS) is an open source search engine for ontologies which is used extensively in the bioinformatics and chemistry communities to annotate biological and biomedical data with ontology terms. Recently there has…
The project of the Ontology Web Search Engine is presented in this paper. The main purpose of this paper is to develop such a project that can be easily implemented. Ontology Web Search Engine is software to look for and index ontologies in…
We present NaturalOWL, a natural language generation system that produces texts describing individuals or classes of OWL ontologies. Unlike simpler OWL verbalizers, which typically express a single axiom at a time in controlled, often not…
Use case specifications have successfully been used for requirements description. They allow joining, in the same modeling space, the expectations of the stakeholders as well as the needs of the software engineer and analyst involved in the…
The SemanticWeb emerged as an extension to the traditional Web, towards adding meaning to a distributed Web of structured and linked data. At its core, the concept of ontology provides the means to semantically describe and structure…
This paper discloses the potential of OWL (Web Ontology Language) ontologies for generation of rules. The main purpose of this paper is to identify new types of rules, which may be generated from OWL ontologies. Rules, generated from OWL…
The W3C Web Ontology Language (OWL) is a powerful knowledge representation formalism at the basis of many semantic-centric applications. Since its unrestricted usage makes reasoning undecidable already in case of very simple tasks,…
Rapid growth of documents, web pages, and other types of text content is a huge challenge for the modern content management systems. One of the problems in the areas of information storage and retrieval is the lacking of semantic data.…
Traditionally, agent and web service are two separate research areas. We figure that, through agent communication, agent is suitable to coordinate web services. However, there exist agent communication problems due to the lack of uniform,…
The eXtensible Markup Language (XML) can be used as data exchange format in different domains. It allows different parties to exchange data by providing common understanding of the basic concepts in the domain. XML covers the syntactic…
The benefit of using ontologies, defined by the respective data standards, is shown. It is presented how ontologies can be used for the semantic enrichment of data and how this can contribute to the vision of the semantic web to become…
Retrieve information resources made by the machine processing may refer to multiple sources. A personal web as part of information resources in the Internet requires a feature that can be understood by computer machines. Therefore, in this…
OLAF (Open Life Science Analysis Framework) is an open-source platform that enables researchers to perform bioinformatics analyses using natural language. By combining large language models (LLMs) with a modular agent-pipe-router…
In recent years, Semantic Web technologies have been increasingly adopted by researchers, industry and public institutions to describe and link data on the Web, create web annotations and consume large knowledge graphs like Wikidata and…
Considering the evolution of the semantic wiki engine based platforms, two main approaches could be distinguished: Ontologies for Wikis (OfW) and Wikis for Ontologies (WfO). OfW vision requires existing ontologies to be imported. Most of…