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Identifying differentially methylated cytosine-guanine dinucleotide (CpG) sites between benign and tumour samples can assist in understanding disease. However, differential analysis of bounded DNA methylation data often requires data…

Personalized federated learning (PFL) has been widely investigated to address the challenge of data heterogeneity, especially when a single generic model is inadequate in satisfying the diverse performance requirements of local clients…

Machine Learning · Computer Science 2024-01-31 Zihan Chen , Howard H. Yang , Tony Q. S. Quek , Kai Fong Ernest Chong

Understanding and accurately predicting protein-ligand binding affinity are essential in the drug design and discovery process. At present, machine learning-based methodologies are gaining popularity as a means of predicting binding…

Biomolecules · Quantitative Biology 2023-01-18 Md Masud Rana , Duc Duy Nguyen

General-purpose embedding models have demonstrated strong performance in text retrieval but remain suboptimal for table retrieval, where highly structured content leads to semantic compression and query-table mismatch. Recent LLM-based…

Information Retrieval · Computer Science 2026-01-23 Tsung-Hsiang Chou , Chen-Jui Yu , Shui-Hsiang Hsu , Yao-Chung Fan

Common fragile sites (cfs) are specific regions in the human genome that are particularly prone to genomic instability under conditions of replicative stress. Several investigations support the view that common fragile sites play a role in…

Genomics · Quantitative Biology 2007-05-23 A. Re , D. Cora , A. M. Puliti , M. Caselle , I. Sbrana

Large language models (LLMs) have unveiled remarkable reasoning capabilities by exploiting chain-of-thought (CoT) prompting, which generates intermediate reasoning chains to serve as the rationale for deriving the answer. However, current…

Computation and Language · Computer Science 2024-02-21 Anni Zou , Zhuosheng Zhang , Hai Zhao , Xiangru Tang

In genetic association studies, detecting phenotype-genotype association is a primary goal. We assume that the relationship between the data -phenotype, genetic markers and environmental covariates - can be modelled by a generalized linear…

Methodology · Statistics 2020-04-13 K. K. Halle , Ø. Bakke , S. Djurovic , A. Bye , E. Ryeng , U. Wisløff , O. A. Andreassen , M. Langaas

Federated learning (FL) enables collaborative learning of a deep learning model without sharing the data of participating sites. FL in medical image analysis tasks is relatively new and open for enhancements. In this study, we propose…

Computer Vision and Pattern Recognition · Computer Science 2024-10-28 Gozde N. Gunesli , Mohsin Bilal , Shan E Ahmed Raza , Nasir M. Rajpoot

Application of the exact statistical inference frequently leads to a non-standard probability distributions of the considered estimators or test statistics. The exact distributions of many estimators and test statistics can be specified by…

Computation · Statistics 2018-01-09 Viktor Witkovský

Existing long-tailed classification (LT) methods only focus on tackling the class-wise imbalance that head classes have more samples than tail classes, but overlook the attribute-wise imbalance. In fact, even if the class is balanced,…

Computer Vision and Pattern Recognition · Computer Science 2025-10-14 Kaihua Tang , Mingyuan Tao , Jiaxin Qi , Zhenguang Liu , Hanwang Zhang

In recent years, advanced image editing and generation methods have rapidly evolved, making detecting and locating forged image content increasingly challenging. Most existing image forgery detection methods rely on identifying the edited…

Computer Vision and Pattern Recognition · Computer Science 2025-04-11 Hengrun Zhao , Yunzhi Zhuge , Yifan Wang , Lijun Wang , Huchuan Lu , Yu Zeng

There is an implicit assumption in software testing that more diverse and varied test data is needed for effective testing and to achieve different types and levels of coverage. Generic approaches based on information theory to measure and…

Software Engineering · Computer Science 2017-09-19 Robert Feldt , Simon Poulding

Using the fact that some depth functions characterize certain family of distribution functions, and under some mild conditions, distribution of the depth is continuous, we have constructed several new multivariate goodness of fit tests…

Statistics Theory · Mathematics 2024-05-14 Rahul Singh , Subhajit Dutta , Neeraj Misra

Understanding how well a deep generative model captures a distribution of high-dimensional data remains an important open challenge. It is especially difficult for certain model classes, such as Generative Adversarial Networks and Diffusion…

Machine Learning · Computer Science 2023-08-08 Suman Ravuri , Mélanie Rey , Shakir Mohamed , Marc Deisenroth

Computer vision models excel at making predictions when the test distribution closely resembles the training distribution. Such models have yet to match the ability of biological vision to learn from multiple sources and generalize to new…

Computer Vision and Pattern Recognition · Computer Science 2022-05-04 Tanmay Gupta , Ryan Marten , Aniruddha Kembhavi , Derek Hoiem

There remains an open question about the usefulness and the interpretation of Machine learning (MLE) approaches for discrimination of spatial patterns of brain images between samples or activation states. In the last few decades, these…

Machine Learning · Statistics 2022-09-22 JM Gorriz , R. Martin-Clemente , C. G. Puntonet , A. Ortiz , J. Ramirez , J. Suckling

The prevailing post-training paradigm for Large Reasoning Models (LRMs) - Supervised Fine-Tuning (SFT) followed by Reinforcement Learning (RL) - suffers from an intrinsic optimization mismatch: the rigid supervision inherent in SFT induces…

Machine Learning · Computer Science 2026-03-19 Zhengyang Zhao , Lu Ma , Yizhen Jiang , Xiaochen Ma , Zimo Meng , Chengyu Shen , Lexiang Tang , Haoze Sun , Peng Pei , Wentao Zhang

If the probability model is correctly specified, then we can estimate the covariance matrix of the asymptotic maximum likelihood estimate distribution using either the first or second derivatives of the likelihood function. Therefore, if…

Methodology · Statistics 2024-11-06 Reyhaneh Hosseinpourkhoshkbari , Richard M. Golden

Personalized federated learning algorithms have shown promising results in adapting models to various distribution shifts. However, most of these methods require labeled data on testing clients for personalization, which is usually…

Machine Learning · Computer Science 2023-10-31 Wenxuan Bao , Tianxin Wei , Haohan Wang , Jingrui He

In medical imaging, developing generalized segmentation models that can handle multiple organs and lesions is crucial. However, the scarcity of fully annotated datasets and strict privacy regulations present significant barriers to data…

Computer Vision and Pattern Recognition · Computer Science 2025-10-29 Pochuan Wang , Chen Shen , Masahiro Oda , Chiou-Shann Fuh , Kensaku Mori , Weichung Wang , Holger R. Roth
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