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To maintain a constant cell size, dividing cells have to coordinate cell cycle events with cell growth. This coordination has for long been supposed to rely on the existence of size thresholds determining cell cycle progression [1]. In…

Cell Behavior · Quantitative Biology 2016-11-04 Ilya Soifer , Lydia Robert , Ariel Amir

Dynamics of a bubble impacting and sliding a tilted surface has been investigated through experimental and computational methods. \textcolor{blue}{Specifically, shear stress generated on the wall has been calculated and compared with…

Fluid Dynamics · Physics 2018-10-30 Ehsan Esmaili , Pranav Shukla , Joseph D. Eifert , Sunghwan Jung

Directional growth caused by gravitropism and corresponding bending of plant cells has been explored since 19th century, however, many aspects of mechanisms underlying the perception of gravity at the molecular level are still not well…

Biological Physics · Physics 2015-12-01 Alexander Muratov , Vladimir A. Baulin

Bacteria often develop distinct phenotypes to adapt to environmental stress. In particular, they can produce biofilms, dense communities of bacteria that live in a complex extracellular matrix. Bacterial biofilms provide a safe haven from…

Quantitative Methods · Quantitative Biology 2025-08-29 Stephen Williams , Daravuth Cheam , Michele K. Nishiguchi , Suzanne S. Sindi , Shilpa Khatri , Erica M. Rutter

Microgravity experiments on board the International Space Station, combined with particle-resolved direct numerical simulations, were conducted to investigate the long-term flocculation behavior of clay suspensions in saline water in the…

Soft Condensed Matter · Physics 2025-05-21 Fabian Kleischmann , Bernhard Vowinckel , Eckart Meiburg , Paolo Luzzatto-Fegiz

The large-scale collective behavior of biological systems can be characterized by macroscopic transport, which arises from the non-equilibrium microscopic interactions among individual constituents. A prominent example is the formation of…

Statistical Mechanics · Physics 2025-07-29 Subhadip Chakraborti , Vasily Zaburdaev

Bacteria can spontaneously develop collective motions by aligning their motions in dense systems. Here, we show that bacteria can also respond collectively to an alternating electrical field and form dynamic clusters oscillating at the same…

Soft Condensed Matter · Physics 2022-10-11 Mei Mei Bao , Isaiah Eze Igwe , Kang Chen , Tian Hui Zhang

Communication and coordination play a major role in the ability of bacterial cells to adapt to ever changing environments and conditions. Recent work has shown that such coordination underlies several aspects of bacterial responses…

Quantitative Methods · Quantitative Biology 2016-04-12 Shashank Singh , Sabrina Rashid , Zhicheng Long , Saket Navlakha , Hanna Salman , Zoltan N. Oltvai , Ziv Bar-Joseph

During the past century, biologists and mathematicians investigated two mechanisms underlying bacteria motion: the run phase during which bacteria move in straight lines and the tumble phase in which they change their orientation. When…

Analysis of PDEs · Mathematics 2025-05-19 Alain Blaustein

Just as big bang nucleosynthesis allows us to probe the expansion rate when the temperature of the universe was around 1 MeV, the measurement of gravity waves from electroweak scale first order phase transitions may allow us to probe the…

Cosmology and Nongalactic Astrophysics · Physics 2015-03-13 Daniel J. H. Chung , Peng Zhou

Mechanical forces are obviously important in the assembly of three-dimensional multicellular structures, but their detailed role is often unclear. We have used growing microcolonies of the bacterium \emph{Escherichia coli} to investigate…

Cell Behavior · Quantitative Biology 2014-02-17 Matthew A. A. Grant , Bartłomiej Wacław , Rosalind J. Allen , Pietro Cicuta

In some conditions, bacteria self-organise into biofilms, supracellular structures made of a self-produced embedding matrix, mainly composed on polysaccharides, DNA, proteins and lipids. It is known that bacteria change their colony/matrix…

One striking feature of bacterial motion is their ability to swim upstream along corners and crevices, by leveraging hydrodynamic interactions. This motion through anatomic ducts or medical devices might be at the origin of serious…

Soft Condensed Matter · Physics 2020-04-07 Nuris Figueroa-Morales , Aramis Rivera , Rodrigo Soto , Anke Lindner , Ernesto Altshuler , Eric Clement

Growth in bacterial populations generally depends on the environment (availability and quality of nutrients, presence of a toxic inhibitor, product inhibition..). Here, we build a model to describe the action of a bacteriostatic antibiotic,…

Biological Physics · Physics 2025-06-25 Barnabe Ledoux , David Lacoste

To examine the microstructural evolution that occurs during transient creep, we deformed olivine aggregates to different strains that spanned the initial transient deformation. Two sets of samples with different initial grain sizes of 5…

Materials Science · Physics 2024-07-09 Harison S. Wiesman , Thomas Breithaupt , David Wallis , Lars N. Hansen

The mean size of exponentially dividing E. coli cells cultured in different nutrient conditions is known to depend on the mean growth rate only. However, the joint fluctuations relating cell size, doubling time and individual growth rate…

Simulation of subgrain growth during recovery is carried out using two-dimensional discrete dislocation dynamics on a hexagonal crystal lattice having three symmetric slip planes. To account for elevated temperature (i) dislocation climb…

Materials Science · Physics 2011-07-27 Péter Dusán Ispánovity , István Groma , Wolfgang Hoffelner , Maria Samaras

The capacity to sense gradients efficiently and acquire information about the ambient environment confers many advantages like facilitating movement toward nutrient sources or away from toxic chemicals. The amplified dispersal evinced by…

Earth and Planetary Astrophysics · Physics 2021-07-16 Manasvi Lingam

Wild populations of Medicago ciliaris and Medicago polymorpha were subjected to four salt treatments 0, 50, 100 and 150 mM NaCl, plant growth and proline concentration in leaves were assessed. The analyzed data revealed significant…

Quantitative Methods · Quantitative Biology 2016-09-26 Khalil Cherifi , Abdelmajid Haddioui , Mohammed El Hansali , El Houssein Boufous

Microbes are everywhere, including in and on our bodies, and have been shown to play key roles in a variety of prevalent human diseases. Consequently, there has been intense interest in the design of bacteriotherapies or "bugs as drugs,"…

Machine Learning · Statistics 2020-04-13 Travis E. Gibson , Georg K. Gerber
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