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In this paper we present a simple microscopic stochastic model describing short term plasticity within a large homogeneous network of interacting neurons. Each neuron is represented by its membrane potential and by the residual calcium…

Probability · Mathematics 2020-01-29 Antonio Galves , Eva Löcherbach , Christophe Pouzat , Errico Presutti

Metachronal swimming, the sequential beating of limbs with a small phase lag, is observed in many organisms at various scales, but has been studied mostly in the limits of high or low Reynolds numbers. Motivated by the swimming of brine…

Fluid Dynamics · Physics 2021-08-03 Hong Nguyen , Daphne Klotsa

Collective states of inanimate particles self-assemble through physical interactions and thermal motion. Despite some phenomenological resemblance, including signatures of criticality, the autonomous dynamics that binds motile agents into…

Soft Condensed Matter · Physics 2023-02-01 Xiangzun Wang , Pin-Chuan Chen , Klaus Kroy , Viktor Holubec , Frank Cichos

Inputs to signaling pathways can have complex statistics that depend on the environment and on the behavioral response to previous stimuli. Such behavioral feedback is particularly important in navigation. Successful navigation relies on…

Molecular Networks · Quantitative Biology 2014-12-02 Yann S. Dufour , Xiongfei Fu , Luis Hernandez-Nunez , Thierry Emonet

Biological systems represent time from microseconds to years. An important gap in our knowledge concerns the mechanisms for encoding time intervals of hundreds of milliseconds to minutes that matter for tasks like navigation, communication,…

Neurons and Cognition · Quantitative Biology 2025-05-22 Raphaël Lafond-Mercier , Leonard Maler , Avner Wallach , André Longtin

Living things enact control of non-equilibrium, dynamical structures through complex biochemical networks, accomplishing spatiotemporally-orchestrated physiological tasks such as cell division, motility, and embryogenesis. While the exact…

How fish modulate their fin stiffness during locomotive manoeuvres remains unknown. We show that changing the fin's curvature modulates its stiffness. Modelling the fin as bendable bony rays held together by a membrane, we deduce that fin…

Fluid Dynamics · Physics 2017-06-01 Khoi Nguyen , Ning Yu , Mahesh M. Bandi , Madhusudhan Venkadesan , Shreyas Mandre

Biological neurons receive multiple noisy oscillatory signals, and their dynamical response to the superposition of these signals is of fundamental importance for information processing in the brain. Here we study the response of neural…

Neurons and Cognition · Quantitative Biology 2017-08-28 Daqing Guo , Matjaz Perc , Yangsong Zhang , Peng Xu , Dezhong Yao

Sparse sensor placement is a central challenge in the efficient characterization of complex systems when the cost of acquiring and processing data is high. Leading sparse sensing methods typically exploit either spatial or temporal…

Optimization and Control · Mathematics 2022-06-08 Thomas L. Mohren , Thomas L. Daniel , Steven L. Brunton , Bingni W. Brunton

In many areas of the brain, neural spiking activity covaries with features of the external world, such as sensory stimuli or an animal's movement. Experimental findings suggest that the variability of neural activity changes over time and…

Neurons and Cognition · Quantitative Biology 2022-10-11 Ganchao Wei , Ian H. Stevenson

We present numerical simulations of simplified models for swimming organisms or robots, using chordwise flexible elastic plates. We focus on the tip vortices originating from three-dimensional effects due to the finite span of the plate.…

Fluid Dynamics · Physics 2018-03-21 T. Engels , D. Kolomenskiy , K. Schneider , J. Sesterhenn

When moving a piano or dancing tango with a partner, how should I control my arm muscles to best feel their movements and follow or guide them smoothly? Here we observe how physically connected pairs tracking a moving target with the arm…

This paper introduces a class of stochastic models of interacting neurons with emergent dynamics similar to those seen in local cortical populations, and compares them to very simple reduced models driven by the same mean excitatory and…

Neurons and Cognition · Quantitative Biology 2017-11-07 Yao Li , Logan Chariker , Lai-Sang Young

Neuronal networks are controlled by a combination of the dynamics of individual neurons and the connectivity of the network that links them together. We study a minimal model of the preBotzinger complex, a small neuronal network that…

Neurons and Cognition · Quantitative Biology 2013-05-29 David J. Schwab , Robijn F. Bruinsma , Alex J. Levine

The dynamics of three mutually coupled cortical neurons with time delays in the coupling are explored numerically and analytically. The neurons are coupled in a line, with the middle neuron sending a somewhat stronger projection to the…

Chaotic Dynamics · Physics 2011-01-25 Alexandra S. Landsman , Ira B. Schwartz

In the mammalian suprachiasmatic nucleus (SCN), a population of noisy cell-autonomous oscillators synchronizes to generate robust circadian rhythms at the organism-level. Within these cells two isoforms of Cryptochrome, Cry1 and Cry2,…

Molecular Networks · Quantitative Biology 2015-02-24 John H. Abel , Lukas A. Widmer , Peter C. St. John , Jörg Stelling , Francis J. Doyle

Microscopic artificial swimmers have recently become highly attractive due to their promising potential for biomedical applications. The pioneering work of Dreyfus et al (2005) has demonstrated the motion of a microswimmer with an…

Fluid Dynamics · Physics 2017-05-11 Yuval Harduf , Dongdong Jin , Yizhar Or , Li Zhang

The spatiotemporal dynamics in systems of active self-propelled particles is controlled by the propulsion mechanism in combination with various direct interactions, such as steric repulsion, hydrodynamics, and chemical fields. Yet, these…

Soft Condensed Matter · Physics 2024-06-03 Mario Theers , Elmar Westphal , Kai Qi , Roland G. Winkler , Gerhard Gompper

Active systems comprised of self-propelled units show fascinating transitions from Brownian-like dynamics to collective coherent motion. Swirling of swimming bacteria is a spectacular example. This study demonstrates that a nematic liquid…

Weakly electric fish are unique models in Neuroscience allowing experimentalists to access, with non invasive techniques,a central nervous system generated spatio-temporal electric pattern of pulses with roles in at least two complex and…

Quantitative Methods · Quantitative Biology 2012-01-24 Caroline Garcia Forlim , Reynaldo Daniel Pinto
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