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Tree-based networks are a class of phylogenetic networks that attempt to formally capture what is meant by "tree-like" evolution. A given non-tree-based phylogenetic network, however, might appear to be very close to being tree-based, or…

Populations and Evolution · Quantitative Biology 2020-01-17 Mareike Fischer , Andrew Francis

Every encoding has priori information if the encoding represents any semantic information of the unverse or object. Encoding means mapping from the unverse to the string or strings of digits. The semantic here is used in the model-theoretic…

Artificial Intelligence · Computer Science 2009-03-24 Xiuli Wang

We present an efficient routing approach for delivering packets in complex networks. On delivering a message from a node to a destination, a node forwards the message to a neighbor by estimating the waiting time along the shortest path from…

Networking and Internet Architecture · Computer Science 2008-06-12 Huan Zhang , Zonghua Liu , Ming Tang , P. M. Hui

A communication network can be modeled as a directed connected graph with edge weights that characterize performance metrics such as loss and delay. Network tomography aims to infer these edge weights from their pathwise versions measured…

Optimization and Control · Mathematics 2019-08-12 Mahmood Ettehad , Nick Duffield , Gregory Berkolaiko

Dynamic regression trees are an attractive option for automatic regression and classification with complicated response surfaces in on-line application settings. We create a sequential tree model whose state changes in time with the…

Methodology · Statistics 2010-11-23 Matthew A. Taddy , Robert B. Gramacy , Nicholas G. Polson

A fundamental problem in network science is the normalization of the topological or physical distance between vertices, that requires understanding the range of variation of the unnormalized distances. Here we investigate the limits of the…

Discrete Mathematics · Computer Science 2021-02-18 Ramon Ferrer-i-Cancho , Carlos Gómez-Rodríguez , Juan Luis Esteban

The analysis of the internal structure of trees is highly important for both forest experts, biological scientists, and the wood industry. Traditionally, CT-scanners are considered as the most efficient way to get an accurate inner…

Computer Vision and Pattern Recognition · Computer Science 2020-02-12 Mohamed Mejri , Antoine Richard , Cédric Pradalier

The number of spanning trees in a graph $G$ is the total number of distinct spanning subgraphs of $G$ that are trees. In this paper we characterize the unique graph with a prescribed vertex (resp. edge) connectivity, minimum degree and…

Combinatorics · Mathematics 2025-12-16 Shaohan Xu , Kexiang Xu , Ivan Damnjanović

Neural networks with tree-based sentence encoders have shown better results on many downstream tasks. Most of existing tree-based encoders adopt syntactic parsing trees as the explicit structure prior. To study the effectiveness of…

Computation and Language · Computer Science 2018-08-30 Haoyue Shi , Hao Zhou , Jiaze Chen , Lei Li

In this paper we initiate the study of the forward and backward shifts on the Hardy space of a tree and the little Hardy space of a tree. In particular, we investigate when these shifts are bounded, find the norm of the shifts if they are…

Functional Analysis · Mathematics 2023-08-23 Adán Ángeles-Romero , Rubén A. Martínez Avendaño

We consider the problem of exploring an unknown tree with a team of $k$ initially colocated mobile agents. Each agent has limited energy and cannot, as a result, traverse more than $B$ edges. The goal is to maximize the number of nodes…

Data Structures and Algorithms · Computer Science 2018-02-20 Evangelos Bampas , Jérémie Chalopin , Shantanu Das , Jan Hackfeld , Christina Karousatou

Message broadcasting in networks could be carried over spanning trees. A set of spanning trees in the same network is node independent if two conditions are satisfied. First, all trees are rooted at node $r$. Second, for every node $u$ in…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-10-04 Zaid Hussain , Bader AlBdaiwi , Anton Cerny

We consider the process of uncovering the vertices of a random labeled tree according to their labels. First, a labeled tree with $n$ vertices is generated uniformly at random. Thereafter, the vertices are uncovered one by one, in order of…

Probability · Mathematics 2023-01-03 Benjamin Hackl , Alois Panholzer , Stephan Wagner

Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…

Populations and Evolution · Quantitative Biology 2022-07-06 Mareike Fischer , Tom Niklas Hamann , Kristina Wicke

Inspired by studies on the airports' network and the physical Internet, we propose a general model of weighted networks via an optimization principle. The topology of the optimal network turns out to be a spanning tree that minimizes a…

Physics and Society · Physics 2009-11-11 Marc Barthelemy , Alessandro Flammini

Branched structures that evolve over time critically determine the function of various natural and engineered systems, including growing vasculature, neural arborization, pulmonary networks such as lungs, river basins, power distribution…

Statistical Mechanics · Physics 2026-03-04 Fabian H. Kreten , Ludger Santen , Reza Shaebani

Let $T$ be a tree on $n$ vertices whose edge weights are positive definite matrices of order $s$. The squared distance matrix of $T$, denoted by $\Delta$, is the $ns \times ns$ block matrix with $\Delta_{ij}=d(i,j)^2$, where $d(i,j)$ is the…

Combinatorics · Mathematics 2022-05-05 Iswar Mahato , M. Rajesh Kannan

One model of message delivery in a computer network is based on labelling each edge by a subset of a (reasonably small) universal set, and then encoding a path as the union of the labels of its edges. Earlier work suggested using random…

Combinatorics · Mathematics 2018-06-26 Gokce Caylak Kayaturan , Alexei Vernitski

D. Wilson~\cite{[Wi]} in the 1990's described a simple and efficient algorithm based on loop-erased random walks to sample uniform spanning trees and more generally weighted trees or forests spanning a given graph. This algorithm provides a…

Probability · Mathematics 2018-08-29 L. Avena , F. Castell , A. Gaudilliere , C. Melot

The transmission of a vertex in a connected graph is the sum of its distances to all the other vertices. A graph is transmission irregular (TI) when all of its vertices have mutually distinct transmissions. In an earlier paper, Al-Yakoob…

Combinatorics · Mathematics 2025-06-09 Ivan Damnjanović