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We describe an new algorithm for visualizing an alignment of biological sequences according to a probabilistic model of evolution. The resulting data array is readily interpreted by the human eye and amenable to digital image techniques. We…

Populations and Evolution · Quantitative Biology 2007-05-23 Lawren Smithline

The subject of this paper is to study conformance checking for timed models, that is, process models that consider both the sequence of events in a process as well as the timestamps at which each event is recorded. Time-aware process mining…

Formal Languages and Automata Theory · Computer Science 2022-07-06 Thomas Chatain , Neha Rino

Program synthesis approaches struggle to learn programs with numerical values. An especially difficult problem is learning continuous values over multiple examples, such as intervals. To overcome this limitation, we introduce an inductive…

Machine Learning · Computer Science 2022-10-05 Céline Hocquette , Andrew Cropper

In this paper, we present a machine learning method for the discovery of analytic solutions to differential equations. The method utilizes an inherently interpretable algorithm, genetic programming based symbolic regression. Unlike…

Machine Learning · Computer Science 2023-02-08 Hongsup Oh , Roman Amici , Geoffrey Bomarito , Shandian Zhe , Robert Kirby , Jacob Hochhalter

Aiming to generate easy-to-handle assembly sequences for robotic assembly, this study tackles assembly sequence generation by considering two tradeoff objectives: (1) insertion conditions and (2) degrees of constraints among assembled…

Robotics · Computer Science 2021-11-18 Takuya Kiyokawa , Jun Takamatsu , Tsukasa Ogasawara

Leveraging the disparity information from both left and right views is crucial for stereo disparity estimation. Left-right consistency check is an effective way to enhance the disparity estimation by referring to the information from the…

Computer Vision and Pattern Recognition · Computer Science 2018-04-04 Zequn Jie , Pengfei Wang , Yonggen Ling , Bo Zhao , Yunchao Wei , Jiashi Feng , Wei Liu

There is increasing attention to evaluating the fairness of search system ranking decisions. These metrics often consider the membership of items to particular groups, often identified using protected attributes such as gender or ethnicity.…

Information Retrieval · Computer Science 2021-08-12 Ömer Kırnap , Fernando Diaz , Asia Biega , Michael Ekstrand , Ben Carterette , Emine Yılmaz

Comparison and evaluation of graph-based representations of sentence meaning is a challenge because competing representations of the same sentence may have different number of nodes, and it is not obvious which nodes should be compared to…

Computation and Language · Computer Science 2026-03-30 Daniel Zeman , Federica Gamba

Point sets matching method is very important in computer vision, feature extraction, fingerprint matching, motion estimation and so on. This paper proposes a robust point sets matching method. We present an iterative algorithm that is…

Computer Vision and Pattern Recognition · Computer Science 2014-11-05 Xiao Liu , Congying Han , Tiande Guo

We present a recurrent neural network based system for automatic quality estimation of natural language generation (NLG) outputs, which jointly learns to assign numerical ratings to individual outputs and to provide pairwise rankings of two…

Computation and Language · Computer Science 2019-10-11 Ondřej Dušek , Karin Sevegnani , Ioannis Konstas , Verena Rieser

Large language models (LLMs) are increasingly used to assist ideation in research, but evaluating the quality of LLM-generated research proposals remains difficult: novelty and soundness are hard to measure automatically, and large-scale…

Computation and Language · Computer Science 2026-05-27 Heng Wang , Pengcheng Jiang , Jiashuo Sun , Zhiyi Shi , Haofei Yu , Jiawei Han , Heng Ji

Similarity judgments provide a well-established method for accessing mental representations, with applications in psychology, neuroscience and machine learning. However, collecting similarity judgments can be prohibitively expensive for…

Machine Learning · Computer Science 2022-02-11 Raja Marjieh , Ilia Sucholutsky , Theodore R. Sumers , Nori Jacoby , Thomas L. Griffiths

We propose "semantic labelling" as a novel ingredient for solving games in the context of LTL synthesis. It exploits recent advances in the automata-based approach, yielding more information for each state of the generated parity game than…

Logic in Computer Science · Computer Science 2019-07-30 Jan Křetínský , Alexander Manta , Tobias Meggendorfer

Summary: BWA-MEM is a new alignment algorithm for aligning sequence reads or long query sequences against a large reference genome such as human. It automatically chooses between local and end-to-end alignments, supports paired-end reads…

Genomics · Quantitative Biology 2013-05-28 Heng Li

The novelty of this paper is to construct the explicit combinatorial formula for the number of all distinct fuzzy matrices of finite order, which leads us to invent a new sequence. In order to achieve this new sequence, we analyze the…

General Mathematics · Mathematics 2019-10-02 S. R. Kannan , Rajesh Kumar Mohapatra

Score matching is an estimation procedure that has been developed for statistical models whose probability density function is known up to proportionality but whose normalizing constant is intractable, so that maximum likelihood is…

Methodology · Statistics 2024-04-23 Jiazhen Xu , Janice L. Scealy , Andrew T. A. Wood , Tao Zou

Considering the high volume, wide variety, and rapid speed of data generation, investigating feature selection methods for big data presents various applications and advantages. By removing irrelevant and redundant features, feature…

Machine Learning · Computer Science 2026-03-12 Mohammad Hossein Safarpour , Seyed Majid Alavi , Mohammad Izadikhah , Hossein Dibachi

This paper deals with model checking problems with respect to LTL properties under fairness assumptions. We first present an efficient algorithm to deal with a fragment of fairness assumptions and then extend the algorithm to handle…

Logic in Computer Science · Computer Science 2016-08-11 Yong Li , Lei Song , Yuan Feng , Lijun Zhang

Multivariate time series alignment is critical for ensuring coherent analysis across variables, but missing values and timestamp inconsistencies make this task highly challenging. Existing approaches often rely on prior imputation, which…

Databases · Computer Science 2025-12-23 Ding Jia , Jingyu Zhu , Yu Sun , Aoqian Zhang , Shaoxu Song , Haiwei Zhang , Xiaojie Yuan

Ranking passages by prompting a large language model (LLM) can achieve promising performance in modern information retrieval (IR) systems. A common approach to sort the ranking list is by prompting LLMs for a pairwise or setwise comparison…

Information Retrieval · Computer Science 2024-11-27 Yifan Zeng , Ojas Tendolkar , Raymond Baartmans , Qingyun Wu , Lizhong Chen , Huazheng Wang
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