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A primary challenge in metagenomics is reconstructing individual microbial genomes from the mixture of short fragments created by sequencing. Recent work leverages the sparsity of the assembly graph to find $r$-dominating sets which enable…

Data Structures and Algorithms · Computer Science 2023-01-24 Yosuke Mizutani , Annie Staker , Blair D. Sullivan

We analyze the convergence rate of the monotone accelerated proximal gradient method, which can be used to solve structured convex composite optimization problems. A linear convergence rate is established when the smooth part of the…

Optimization and Control · Mathematics 2026-03-16 Zepeng Wang , Juan Peypouquet

We study the approximability of the NP-complete \textsc{Maximum Minimal Feedback Vertex Set} problem. Informally, this natural problem seems to lie in an intermediate space between two more well-studied problems of this type:…

Computational Complexity · Computer Science 2021-02-12 Louis Dublois , Tesshu Hanaka , Mehdi Khosravian Ghadikolaei , Michael Lampis , Nikolaos Melissinos

By definition, a rigid graph in $\mathbb{R}^d$ (or on a sphere) has a finite number of embeddings up to rigid motions for a given set of edge length constraints. These embeddings are related to the real solutions of an algebraic system.…

Combinatorics · Mathematics 2021-10-26 Evangelos Bartzos , Ioannis Z. Emiris , Raimundas Vidunas

In the problem of minimum connected dominating set with routing cost constraint, we are given a graph $G=(V,E)$, and the goal is to find the smallest connected dominating set $D$ of $G$ such that, for any two non-adjacent vertices $u$ and…

Data Structures and Algorithms · Computer Science 2018-02-20 Tung-Wei Kuo

We study the design of fixed-parameter algorithms for problems already known to be solvable in polynomial time. The main motivation is to get more efficient algorithms for problems with unattractive polynomial running times. Here, we focus…

Computational Complexity · Computer Science 2021-01-06 Archontia C. Giannopoulou , George B. Mertzios , Rolf Niedermeier

The decision problem of perfect matchings in uniform hypergraphs is famously an NP-complete problem. It has been shown by Keevash--Knox--Mycroft [STOC, 2013] that for every $\varepsilon>0$, such decision problem restricted to $k$-uniform…

Combinatorics · Mathematics 2025-10-23 Jie Han , Jingwen Zhao

Classical optimisation theory guarantees monotonic objective decrease for gradient descent (GD) when employed in a small step size, or ``stable", regime. In contrast, gradient descent on neural networks is frequently performed in a large…

Machine Learning · Computer Science 2025-10-21 Lachlan Ewen MacDonald , Hancheng Min , Leandro Palma , Salma Tarmoun , Ziqing Xu , René Vidal

In Polyamorous Scheduling, we are given an edge-weighted graph and must find a periodic schedule of matchings in this graph which minimizes the maximal weighted waiting time between consecutive occurrences of the same edge. This NP-hard…

Data Structures and Algorithms · Computer Science 2024-11-12 Yuriy Biktairov , Leszek Gąsieniec , Wanchote Po Jiamjitrak , Namrata , Benjamin Smith , Sebastian Wild

The approximate degree of a Boolean function $f(x_{1},x_{2},\ldots,x_{n})$ is the minimum degree of a real polynomial that approximates $f$ pointwise within $1/3$. Upper bounds on approximate degree have a variety of applications in…

Computational Complexity · Computer Science 2018-01-16 Alexander A. Sherstov

In the maximum independent set of convex polygons problem, we are given a set of $n$ convex polygons in the plane with the objective of selecting a maximum cardinality subset of non-overlapping polygons. Here we study a special case of the…

Computational Geometry · Computer Science 2024-02-13 Fabrizio Grandoni , Edin Husić , Mathieu Mari , Antoine Tinguely

We consider the generalized moment problem (GMP) over the simplex and the sphere. This is a rich setting and it contains NP-hard problems as special cases, like constructing optimal cubature schemes and rational optimization. Using the…

Optimization and Control · Mathematics 2021-03-05 Felix Kirschner , Etienne de Klerk

Parameterized complexity theory has enabled a refined classification of the difficulty of NP-hard optimization problems on graphs with respect to key structural properties, and so to a better understanding of their true difficulties. More…

Data Structures and Algorithms · Computer Science 2017-10-19 David Coudert , Guillaume Ducoffe , Alexandru Popa

A recent line of research has shown that gradient-based algorithms with random initialization can converge to the global minima of the training loss for over-parameterized (i.e., sufficiently wide) deep neural networks. However, the…

Machine Learning · Computer Science 2019-06-12 Difan Zou , Quanquan Gu

Stochastic non-smooth convex optimization constitutes a class of problems in machine learning and operations research. This paper considers minimization of a non-smooth function based on stochastic subgradients. When the function has a…

Optimization and Control · Mathematics 2016-07-12 Sucha Supittayapornpong , Michael J. Neely

The expansion of a hypergraph, a natural extension of the notion of expansion in graphs, is defined as the minimum over all cuts in the hypergraph of the ratio of the number of the hyperedges cut to the size of the smaller side of the cut.…

Data Structures and Algorithms · Computer Science 2014-04-18 Anand Louis , Yury Makarychev

We consider a stochastic version of the proximal point algorithm for optimization problems posed on a Hilbert space. A typical application of this is supervised learning. While the method is not new, it has not been extensively analyzed in…

Optimization and Control · Mathematics 2021-09-28 Monika Eisenmann , Tony Stillfjord , Måns Williamson

The point placement problem is to determine the positions of a set of $n$ distinct points, P = {p1, p2, p3, ..., pn}, on a line uniquely, up to translation and reflection, from the fewest possible distance queries between pairs of points.…

Data Structures and Algorithms · Computer Science 2012-10-16 Md. Shafiul Alam , Asish Mukhopadhyay

In this letter, an accelerated quadratic programming (QP) algorithm is proposed based on the proximal gradient method. The algorithm can achieve convergence rate $O(1/p^{\alpha})$, where $p$ is the iteration number and $\alpha$ is the given…

Optimization and Control · Mathematics 2022-01-25 Jia Wang , Ying Yang

Computing the Euler genus of a graph is a fundamental problem in graph theory and topology. It has been shown to be NP-hard by [Thomassen '89] and a linear-time fixed-parameter algorithm has been obtained by [Mohar '99]. Despite extensive…

Data Structures and Algorithms · Computer Science 2014-12-05 Ken-ichi Kawarabayashi , Anastasios Sidiropoulos