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Generating realistic and controllable 3D human avatars is a long-standing challenge, particularly when covering broad attribute ranges such as ethnicity, age, clothing styles, and detailed body shapes. Capturing and annotating large-scale…

Computer Vision and Pattern Recognition · Computer Science 2025-10-14 Yuxuan Xue , Xianghui Xie , Margaret Kostyrko , Gerard Pons-Moll

Phylogenomics has ushered in an age of discordance. Analyses often reveal abundant discordances among phylogenies of different parts of genomes, as well as incongruences between species trees obtained using different methods or data…

Populations and Evolution · Quantitative Biology 2018-02-01 Erfan Sayyari , James B. Whitfield , Siavash Mirarab

The CMAP (cultural mapping and pattern analysis) visualization toolkit introduced in this paper is an open-source suite for analyzing and visualizing text data - from qualitative fieldnotes and in-depth interview transcripts to historical…

Applications · Statistics 2025-10-21 Corey M. Abramson , Yuhan , Nian

We present HoloGraphs, a novel approach for physically representing, explaining, exploring, and interacting with dynamic networks. HoloGraphs addresses the challenges of visualizing and understanding evolving network structures by providing…

Social and Information Networks · Computer Science 2025-03-05 Daniel Pahr , Henry Ehlers , Velitchko Filipov

Time series data are prevalent across various domains and often encompass large datasets containing multiple time-dependent features in each sample. Exploring time-varying data is critical for data science practitioners aiming to understand…

Graphics · Computer Science 2025-09-26 Evandro S. Ortigossa , Fábio F. Dias , Diego C. Nascimento , Luis Gustavo Nonato

Gene innovation is a key mechanism on the evolution and phenotypic diversity of life forms. There is a need for tools able to study gene innovation across an increasingly large number of genomic sequences to maximally capitalise our…

Populations and Evolution · Quantitative Biology 2012-12-18 Inti Pedroso , Mark J. F. Brown , Seirian Sumner

Variability is ubiquitous in nature and a fundamental feature of complex systems. Few studies, however, have investigated variance itself as a trait under genetic control. By focusing primarily on trait means and ignoring the effect of…

Schema induction builds a graph representation explaining how events unfold in a scenario. Existing approaches have been based on information retrieval (IR) and information extraction(IE), often with limited human curation. We demonstrate a…

Phylogenetic inference, grounded in molecular evolution models, is essential for understanding the evolutionary relationships in biological data. Accounting for the uncertainty of phylogenetic tree variables, which include tree topologies…

Machine Learning · Computer Science 2023-12-04 Takahiro Mimori , Michiaki Hamada

Invariant Point Attention (IPA) is a key algorithm for geometry-aware modeling in structural biology, central to many protein and RNA models. However, its quadratic complexity limits the input sequence length. We introduce FlashIPA, a…

Machine Learning · Computer Science 2025-05-20 Andrew Liu , Axel Elaldi , Nicholas T Franklin , Nathan Russell , Gurinder S Atwal , Yih-En A Ban , Olivia Viessmann

Navigating, visualizing, and discovery in graph data is frequently a difficult prospect. This is especially true for knowledge graphs (KGs), due to high number of possible labeled connections to other data. However, KGs are frequently…

Human-Computer Interaction · Computer Science 2025-08-12 Antrea Christou , Cogan Shimizu

Purpose: Handling heterogeneous and mixed data types has become increasingly critical with the exponential growth in real-world databases. While deep generative models attempt to merge diverse data views into a common latent space, they…

Machine Learning · Computer Science 2024-10-23 Alejandro Guerrero-López , Carlos Sevilla-Salcedo , Vanessa Gómez-Verdejo , Pablo M. Olmos

This paper introduces HuLP, a Human-in-the-Loop for Prognosis model designed to enhance the reliability and interpretability of prognostic models in clinical contexts, especially when faced with the complexities of missing covariates and…

Computer Vision and Pattern Recognition · Computer Science 2024-07-10 Muhammad Ridzuan , Mai Kassem , Numan Saeed , Ikboljon Sobirov , Mohammad Yaqub

Despite data's crucial role in machine learning, most existing tools and research tend to focus on systems on top of existing data rather than how to interpret and manipulate data. In this paper, we propose DataLab, a unified data-oriented…

Machine Learning · Computer Science 2022-02-28 Yang Xiao , Jinlan Fu , Weizhe Yuan , Vijay Viswanathan , Zhoumianze Liu , Yixin Liu , Graham Neubig , Pengfei Liu

Disease heterogeneity has been a critical challenge for precision diagnosis and treatment, especially in neurologic and neuropsychiatric diseases. Many diseases can display multiple distinct brain phenotypes across individuals, potentially…

Imagine having a conversation with a socially intelligent agent. It can attentively listen to your words and offer visual and linguistic feedback promptly. This seamless interaction allows for multiple rounds of conversation to flow…

Computer Vision and Pattern Recognition · Computer Science 2024-12-06 Yongming Zhu , Longhao Zhang , Zhengkun Rong , Tianshu Hu , Shuang Liang , Zhipeng Ge

In an era dominated by video content, understanding its structure and dynamics has become increasingly important. This paper presents a hybrid framework that combines a distributed multi-GPU inference system with an interactive…

Computer Vision and Pattern Recognition · Computer Science 2025-10-07 Doğanay Demir , İlknur Durgar Elkahlout

Dynamic graph visualization attracts researchers' concentration as it represents time-varying relationships between entities in multiple domains (e.g., social media analysis, academic cooperation analysis, team sports analysis). Integrating…

Human-Computer Interaction · Computer Science 2022-06-13 Baofeng Chang , Sujia Zhu , Qi Jiang , Wang Xia , Jingwei Tang , Lvhan Pan , Ronghua Liang , Guodao Sun

The ability of tumors to evolve and adapt by developing subclones in different genetic and epigenetic states is a major challenge in oncology. Traditional tools like multi-regional sequencing used to study tumor evolution and the resultant…

Contour maps are an essential tool for exploring spatial features of the terrain, such as distance, directions, and surface gradient among the contour areas. User interactions in contour-based visualizations create approaches to visual…

Human-Computer Interaction · Computer Science 2024-10-15 Abdullah-Al-Raihan Nayeem , Dongyun Han , William J. Tolone , Isaac Cho
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