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We describe a simple algorithm based on a Markov chain process to generate simply connected acyclic directed graphs over a fixed set of vertices. This algorithm is an extension of a previous one, designed to generate acyclic digraphs, non…

Discrete Mathematics · Computer Science 2007-05-23 Guy Melancon , Fabrice Philippe

It is known that a Markov basis of the binary graph model of a graph $G$ corresponds to a set of binomial generators of cut ideals $I_{\widehat{G}}$ of the suspension $\widehat{G}$ of $G$. In this paper, we give another application of cut…

Statistics Theory · Mathematics 2014-05-15 Satoshi Aoki , Takayuki Hibi , Hidefumi Ohsugi

"Mixed Data" comprising a large number of heterogeneous variables (e.g. count, binary, continuous, skewed continuous, among other data types) are prevalent in varied areas such as genomics and proteomics, imaging genetics, national…

Statistics Theory · Mathematics 2014-11-04 Eunho Yang , Pradeep Ravikumar , Genevera I. Allen , Yulia Baker , Ying-Wooi Wan , Zhandong Liu

We develop terminology and methods for working with maximally oriented partially directed acyclic graphs (maximal PDAGs). Maximal PDAGs arise from imposing restrictions on a Markov equivalence class of directed acyclic graphs, or…

Statistics Theory · Mathematics 2018-06-20 Emilija Perković , Markus Kalisch , Maloes H. Maathuis

Directed acyclic graphs provide a fundamental tool for representing directed dependence structures in multivariate network data, and are widely used to model financial and economic networks. However, accurate and interpretable estimation…

Methodology · Statistics 2026-05-26 Huihang Liu , Wenhui Li , Xinyu Zhang

Counting and uniform sampling of directed acyclic graphs (DAGs) from a Markov equivalence class are fundamental tasks in graphical causal analysis. In this paper, we show that these tasks can be performed in polynomial time, solving a…

Machine Learning · Computer Science 2020-12-18 Marcel Wienöbst , Max Bannach , Maciej Liśkiewicz

A model of discrete spacetime on a microscopic level is considered. It is a directed acyclic dyadic graph. This is the particular case of a causal set. The goal of this model is to describe particles as some repetitive symmetrical…

General Relativity and Quantum Cosmology · Physics 2014-06-05 Alexey L. Krugly

Assessing the accuracy of the output of causal discovery algorithms is crucial in developing and comparing novel methods. Common evaluation metrics such as the structural Hamming distance are useful for assessing individual links of causal…

Methodology · Statistics 2025-04-07 Jonas Wahl , Jakob Runge

Directed acyclic graph (DAG) models are popular for capturing causal relationships. From observational and interventional data, a DAG model can only be determined up to its \emph{interventional Markov equivalence class} (I-MEC). We…

Machine Learning · Statistics 2019-03-07 Dmitriy Katz , Karthikeyan Shanmugam , Chandler Squires , Caroline Uhler

Bayesian networks are a widely-used class of probabilistic graphical models capable of representing symmetric conditional independence between variables of interest using the topology of the underlying graph. For categorical variables, they…

Machine Learning · Statistics 2022-10-07 Gherardo Varando , Federico Carli , Manuele Leonelli

In a previous paper [Pearl and Verma, 1991] we presented an algorithm for extracting causal influences from independence information, where a causal influence was defined as the existence of a directed arc in all minimal causal models…

Artificial Intelligence · Computer Science 2013-03-25 Tom S. Verma , Judea Pearl

A concentration graph associated with a random vector is an undirected graph where each vertex corresponds to one random variable in the vector. The absence of an edge between any pair of vertices (or variables) is equivalent to full…

Statistics Theory · Mathematics 2010-01-14 Dhafer Malouche

Scientists often use directed acyclic graphs (days) to model the qualitative structure of causal theories, allowing the parameters to be estimated from observational data. Two causal models are equivalent if there is no experiment which…

Artificial Intelligence · Computer Science 2013-04-05 Tom S. Verma , Judea Pearl

Causality is important for designing interpretable and robust methods in artificial intelligence research. We propose a local approach to identify whether a variable is a cause of a given target under the framework of causal graphical…

Machine Learning · Statistics 2022-03-08 Zhuangyan Fang , Yue Liu , Zhi Geng , Shengyu Zhu , Yangbo He

While visual comparison of directed acyclic graphs (DAGs) is commonly encountered in various disciplines (e.g., finance, biology), knowledge about humans' perception of graph similarity is currently quite limited. By graph similarity…

Human-Computer Interaction · Computer Science 2017-09-07 Kathrin Ballweg , Margit Pohl , Günter Wallner , Tatiana von Landesberger

We provide a parameterization of the discrete nested Markov model, which is a supermodel that approximates DAG models (Bayesian network models) with latent variables. Such models are widely used in causal inference and machine learning. We…

Statistics Theory · Mathematics 2022-12-20 Robin J. Evans , Thomas S. Richardson

Assuming a directed acyclic graph (DAG) that represents prior knowledge of causal relationships between variables is a common starting point for cause-effect estimation. Existing literature typically invokes hypothetical domain expert…

Machine Learning · Statistics 2025-03-11 Kirtan Padh , Zhufeng Li , Cecilia Casolo , Niki Kilbertus

The sizes of Markov equivalence classes of directed acyclic graphs play important roles in measuring the uncertainty and complexity in causal learning. A Markov equivalence class can be represented by an essential graph and its undirected…

Machine Learning · Statistics 2016-10-26 Yangbo He , Bin Yu

The causal relationships among a set of random variables are commonly represented by a Directed Acyclic Graph (DAG), where there is a directed edge from variable $X$ to variable $Y$ if $X$ is a direct cause of $Y$. From the purely…

Machine Learning · Statistics 2020-06-18 Ali AhmadiTeshnizi , Saber Salehkaleybar , Negar Kiyavash

In this article almost semi-continuous processes with stationary independent increments on a finite irreducible Markov chain are considered. For these processes the components of matrix factorization identity are concretely defined. On the…

Probability · Mathematics 2009-09-01 D. V. Gusak , E. V. Karnaukh