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This system paper documents the technical foundations for the extension of the Topology ToolKit (TTK) to distributed-memory parallelism with the Message Passing Interface (MPI). While several recent papers introduced topology-based…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-16 Eve Le Guillou , Michael Will , Pierre Guillou , Jonas Lukasczyk , Pierre Fortin , Christoph Garth , Julien Tierny

Graph clustering has many important applications in computing, but due to growing sizes of graphs, even traditionally fast clustering methods such as spectral partitioning can be computationally expensive for real-world graphs of interest.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-11 Julian Shun , Farbod Roosta-Khorasani , Kimon Fountoulakis , Michael W. Mahoney

Distributed computing excels at processing large scale data, but the communication cost for synchronizing the shared parameters may slow down the overall performance. Fortunately, the interactions between parameter and data in many problems…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-05-19 Mu Li , Dave G. Andersen , Alexander J. Smola

Matrix multiplication is a fundamental computation in many scientific disciplines. In this paper, we show that novel fast matrix multiplication algorithms can significantly outperform vendor implementations of the classical algorithm and…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-01-08 Austin R. Benson , Grey Ballard

The currently most efficient algorithm for inference with a probabilistic network builds upon a triangulation of a network's graph. In this paper, we show that pre-processing can help in finding good triangulations forprobabilistic…

Artificial Intelligence · Computer Science 2013-01-14 Hans L. Bodlaender , Arie M. C. A. Koster , Frank van den Eijkhof , Linda C. van der Gaag

Graph Convolutional Networks (GCNs) are extensively utilized for deep learning on graphs. The large data sizes of graphs and their vertex features make scalable training algorithms and distributed memory systems necessary. Since the…

Machine Learning · Computer Science 2022-12-14 Gunduz Vehbi Demirci , Aparajita Haldar , Hakan Ferhatosmanoglu

Listing and counting triangles in graphs is a key algorithmic kernel for network analyses including community detection, clustering coefficients, k-trusses, and triangle centrality. We design and implement a new serial algorithm for…

Data Structures and Algorithms · Computer Science 2023-09-21 David A. Bader

The problem of solving a system of polynomial equations is one of the most fundamental problems in applied mathematics. Among them, the problem of solving a system of binomial equations form a important subclass for which specialized…

Algebraic Geometry · Mathematics 2015-03-03 Tianran Chen , Dhagash Mehta

Several high-throughput distributed data-processing applications require multi-hop processing of streams of data. These applications include continual processing on data streams originating from a network of sensors, composing a multimedia…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-03-26 Shah Asaduzzaman , Muthucumaru Maheswaran

The most commonly used method to tackle the graph partitioning problem in practice is the multilevel approach. During a coarsening phase, a multilevel graph partitioning algorithm reduces the graph size by iteratively contracting nodes and…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-03-26 Henning Meyerhenke , Peter Sanders , Christian Schulz

The Reeb graph of a scalar function defined on a domain gives a topologically meaningful summary of that domain. Reeb graphs have been shown in the past decade to be of great importance in geometric processing, image processing, computer…

Computational Geometry · Computer Science 2020-10-13 Mustafa Hajij , Paul Rosen

MPI+Threads, embodied by the MPI/OpenMP hybrid programming model, is a parallel programming paradigm where threads are used for on-node shared-memory parallelization and MPI is used for multi-node distributed-memory parallelization. OpenMP…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-31 Hui Zhou , Ken Raffenetti , Junchao Zhang , Yanfei Guo , Rajeev Thakur

Small distributed systems are limited by their main memory to generate massively large graphs. Trivial extension to current graph generators to utilize external memory leads to large amount of random I/O hence do not scale with size. In…

Databases · Computer Science 2012-10-02 Sandeep Gupta

We present an MPI-parallel algorithm for the in-situ visualization of computational data that is built around a distributed linear forest-of-octrees data structure. Such octrees are frequently used in element-based numerical simulations;…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-09-06 Carsten Burstedde

The modern scale of data has brought new challenges to Bayesian inference. In particular, conventional MCMC algorithms are computationally very expensive for large data sets. A promising approach to solve this problem is embarrassingly…

Machine Learning · Statistics 2015-10-27 Xiangyu Wang , Fangjian Guo , Katherine A. Heller , David B. Dunson

Deep learning models trained on large data sets have been widely successful in both vision and language domains. As state-of-the-art deep learning architectures have continued to grow in parameter count so have the compute budgets and times…

Deep Learning (DL) models are becoming larger, because the increase in model size might offer significant accuracy gain. To enable the training of large deep networks, data parallelism and model parallelism are two well-known approaches for…

Computer Vision and Pattern Recognition · Computer Science 2020-09-16 Wentao Zhu , Can Zhao , Wenqi Li , Holger Roth , Ziyue Xu , Daguang Xu

Partitioning a graph into balanced blocks such that few edges run between blocks is a key problem for large-scale distributed processing. A current trend for partitioning huge graphs are streaming algorithms, which use low computational…

Data Structures and Algorithms · Computer Science 2022-02-02 Marcelo Fonseca Faraj , Christian Schulz

The main goal of distribution network (DN) expansion planning is essentially to achieve minimal investment constrained with specified reliability requirements. The reliability-constrained distribution network planning (RcDNP) problem can be…

Systems and Control · Electrical Eng. & Systems 2023-03-10 Yaqi Sun , Wenchuan Wu , Yi Lin , Hai Huang , Hao Chen

Performance of supercomputer depends on the quality of resource manager, one of its functions is assignment of jobs to the nodes of clusters or MPP computers. Parts of parallel programs interact with each other with different intensity, and…

Performance · Computer Science 2022-12-26 A. V. Baranov , E. A. Kiselev , B. M. Shabanov , A. A. Sorokin , P. N. Telegin
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