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A wide variety of stochastic models of cladogenesis (based on speciation and extinction) lead to an identical distribution on phylogenetic tree shapes once the edge lengths are ignored. By contrast, the distribution of the tree's edge…

Populations and Evolution · Quantitative Biology 2024-11-05 Mike Steel

In response to increasing threats to biodiversity, conservation objectives have been set at national and international level, with the aim of halting biodiversity decline by reducing direct anthropogenic pressures on species. However, the…

One of the first beings affected by changes in the climate are trees, one of our most vital resources. In this study tree species interaction and the response to climate in different ecological environments is observed by applying a joint…

Populations and Evolution · Quantitative Biology 2019-10-14 Hyun Choi , Ali Sadeghian , Sergio Marconi , Ethan White , Daisy Zhe Wang

The influence of climate on biodiversity is an important ecological question. Various theories try to link climate change to allelic richness and therefore to predict the impact of global warming on genetic diversity. We model the…

Applications · Statistics 2008-07-17 Liliane Bel , Avner Bar-Hen , Rachid Cheddadi , Rémy Petit

Genomic data are rapidly resolving the tree of living species calibrated to time, the timetree of life, which will provide a framework for research in diverse fields of science. Previous analyses of taxonomically restricted timetrees have…

Populations and Evolution · Quantitative Biology 2014-12-16 S. Blair Hedges , Julie Marin , Michael Suleski , Madeline Paymer , Sudhir Kumar

If predictions for species extinctions hold, then the `tree of life' today may be quite different to that in (say) 100 years. We describe a technique to quantify how much each species is likely to contribute to future biodiversity, as…

Populations and Evolution · Quantitative Biology 2007-05-23 Mike Steel , Aki Mimoto , Arne O. Mooers

In conservation biology, phylogenetic diversity (PD) provides a way to quantify the impact of the current rapid extinction of species on the evolutionary `Tree of Life'. This approach recognises that extinction not only removes species but…

Populations and Evolution · Quantitative Biology 2022-04-13 Kerry Manson , Charles Semple , Mike Steel

Phylogenetic Diversity (PD) is a measure of the overall biodiversity of a set of present-day species (taxa) within a phylogenetic tree. In Maximize Phylogenetic Diversity (MPD) one is asked to find a set of taxa (of bounded size/cost) for…

Computational Complexity · Computer Science 2024-03-22 Mark Jones , Jannik Schestag

Phylogenetic diversity is a measure for describing how much of an evolutionary tree is spanned by a subset of species. If one applies this to the (unknown) subset of current species that will still be present at some future time, then this…

Subcellular Processes · Quantitative Biology 2009-09-29 Beata Faller , Fabio Pardi , Mike Steel

Predictions of biodiversity trajectories under climate change are crucial in order to act effectively in maintaining the diversity of species. In many ecological applications, future predictions are made under various global warming…

Quantitative Methods · Quantitative Biology 2022-07-19 Matthew Davidow , Cory Merow , Judy Che-Castaldo , Toryn Schafer , Marie-Christine Duker , Derek Corcoran , David Matteson

For many taxa, the current high rates of extinction are likely to result in a significant loss of biodiversity. The evolutionary heritage of biodiversity is frequently quantified by a measure called phylogenetic diversity (PD). We predict…

Populations and Evolution · Quantitative Biology 2013-06-13 Amaury Lambert , Mike Steel

Policies to mitigate climate change and biodiversity loss often assume that protecting carbon-rich forests provides co-benefits in terms of biodiversity, due to the spatial congruence of carbon stocks and biodiversity at biogeographic…

Populations and Evolution · Quantitative Biology 2019-03-01 F. M. Sabatini , R. B. de Andrade , Y. Paillet , P. Odor , C. Bouget , T. Campagnaro , F. Gosselin , P. Janssen , W. Mattioli , J. Nascimbene , T. Sitzia , T. Kuemmerle , S. Burrascano

With climate change, we are expecting more frequent extreme weather events in many regions worldwide. These events can trigger disruptive, deadly natural hazards, which catch the attention of the media and raise awareness in citizens and…

Geophysics · Physics 2024-01-17 Marco Loche , Gianvito Scaringi

Recent methodological advances are enabling better examination of speciation and extinction processes and patterns. A major open question is the origin of large discrepancies in species number between groups of the same age. Existing…

Populations and Evolution · Quantitative Biology 2015-09-01 Sacha Laurent , Marc Robinson-Rechavi , Nicolas Salamin

Understanding the patterns and processes of diversification of life in the planet is a key challenge of science. The Tree of Life represents such diversification processes through the evolutionary relationships among the different taxa, and…

Populations and Evolution · Quantitative Biology 2011-06-16 E. Alejandro Herrada , Claudio J. Tessone , Konstantin Klemm , Victor M. Eguiluz , Emilio Hernandez-Garcia , Carlos M. Duarte

The concept of sustainable intensification in agriculture necessitates the implementation of management practices that prioritize sustainability without compromising productivity. However, the effects of such practices are known to depend…

Species' interactions are shaped by their traits. Thus, we expect traits -- in particular, trait (dis)similarity -- to play a central role in determining whether a particular set of species coexists. Traits are, in turn, the outcome of an…

Populations and Evolution · Quantitative Biology 2025-03-19 Carlos A. Servan , Jose A. Capitan , Zachary R. Miller , Stefano Allesina

An increasing number of studies have demonstrated correlations between climate trends and body size change of organisms. In many cases, climate might be expected to influence body size by altering thermoregulation, energetics or food…

Populations and Evolution · Quantitative Biology 2014-04-24 Grant M. Connette , John A. Crawford , William E. Peterman

Despite tremendous interest in the topic and decades of research, the origins of the major losses of biodiversity in the history of life on Earth remain elusive. A variety of possible causes for these mass-extinction events have been…

Atmospheric and Oceanic Physics · Physics 2009-08-25 Georg Feulner
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