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The repeated presentation of an identical visual stimulus in the receptive field of a neuron may evoke different spiking patterns at each trial. Probabilistic methods are essential to understand the functional role of this variance within…

Neurons and Cognition · Quantitative Biology 2016-11-15 Wahiba Taouali , Giacomo Benvenuti , Pascal Wallisch , Frédéric Chavane , Laurent Perrinet

This paper proposes a novel Machine Learning-based approach to solve a Poisson problem with mixed boundary conditions. Leveraging Graph Neural Networks, we develop a model able to process unstructured grids with the advantage of enforcing…

A variety of machine learning tasks---e.g., matrix factorization, topic modelling, and feature allocation---can be viewed as learning the parameters of a probability distribution over bipartite graphs. Recently, a new class of models for…

Machine Learning · Statistics 2017-12-07 Victor Veitch , Ekansh Sharma , Zacharie Naulet , Daniel M. Roy

The detection reliability of weak signals is a critical issue in many astronomical contexts and may have severe consequences for determining number counts and luminosity functions, but also for optimising the use of telescope time in…

Instrumentation and Methods for Astrophysics · Physics 2016-04-06 Roberto Vio , Paola Andreani

In substations, the presence of random transient impulsive interference sources makes noise highly non-Gaussian. In this paper, the primary interest is to provide a general model for wireless channel in presence of these transient impulsive…

Methodology · Statistics 2015-04-28 Minh Au , Basile L. Agba , François Gagnon

Rapid growth in the field of quantitative digital image analysis is paving the way for researchers to make precise measurements about objects in an image. To compute quantities from the image such as the density of compressed materials or…

Computer Vision and Pattern Recognition · Computer Science 2017-07-31 Marylesa Howard , Margaret C. Hock , B. T. Meehan , Leora Dresselhaus-Cooper

DNA methylation (DNAme) is a critical component of the epigenetic regulatory machinery and aberrations in DNAme patterns occur in many diseases, such as cancer. Mapping and understanding DNAme profiles offers considerable promise for…

Genomic data I used in many fields but, it has become known that most of the platforms used in the sequencing process produce significant errors. This means that the analysis and inferences generated from these data may have some errors…

Genomics · Quantitative Biology 2024-09-05 Ferdinand Kartriku , Robert Sowah , Charles Saah

This paper describes an extension, to higher dimensions, of the Bayesian Blocks algorithm for estimating signals in noisy time series data (Scargle 1998, 2000). The mathematical problem is to find the partition of the data space with the…

Numerical Analysis · Mathematics 2025-10-20 Jeffrey D. Scargle

At the core of high throughput DNA sequencing platforms lies a bio-physical surface process that results in a random geometry of clusters of homogenous short DNA fragments typically hundreds of base pairs long - bridge amplification. The…

Genomics · Quantitative Biology 2015-08-13 Eliza O'Reilly , Francois Baccelli , Gustavo de Veciana , Haris Vikalo

De novo genome assembly is challenging in highly repetitive regions; however, reference-guided assemblers often suffer from bias. We propose a framework for pangenome-guided sequence assembly, which can resolve short-read data in complex…

Quantum Physics · Physics 2026-02-11 Josh Cudby , James Bonfield , Chenxi Zhou , Richard Durbin , Sergii Strelchuk

As sequencing technologies become more affordable and genomic databases expand continuously, the reuse of publicly available sequencing data emerges as a powerful strategy for studying microbial pathogens. Indeed, raw sequencing reads…

Quantitative Methods · Quantitative Biology 2025-05-16 Damien Richard , Nils Poulicard

Many high-energy physics analyses require the presence of leptons from $W$, $Z$, or $H$ boson decay. For these analyses, signatures that mimic such leptons present a `fake lepton' background that must be estimated. Since the magnitude of…

High Energy Physics - Experiment · Physics 2016-06-23 Erich W. Varnes

We consider nonparametric sequential hypothesis testing problem when the distribution under the null hypothesis is fully known but the alternate hypothesis corresponds to some other unknown distribution with some loose constraints. We…

Information Theory · Computer Science 2013-11-15 Shouvik Ganguly , K Sahasranand , Vinod Sharma

We investigate the problem of scanning and prediction ("scandiction", for short) of multidimensional data arrays. This problem arises in several aspects of image and video processing, such as predictive coding, for example, where an image…

Information Theory · Computer Science 2007-07-13 Asaf Cohen , Neri Merhav , Tsachy Weissman

This paper deals with a method for solving Poisson Equation (PE) based on genetic algorithms and grammatical evolution. The method forms generations of solutions expressed in an analytical form. Several examples of PE are tested and in most…

Neural and Evolutionary Computing · Computer Science 2014-01-03 Khalid Jebari , Mohammed Madiafi , Abdelaziz El Moujahid

Humans and other animals behave as if we perform fast Bayesian inference underlying decisions and movement control given uncertain sense data. Here we show that a biophysically realistic model of the subthreshold membrane potential of a…

Neurons and Cognition · Quantitative Biology 2014-06-20 Michael G. Paulin , Andre van Schaik

Deep neural networks are susceptible to poisoning attacks by purposely polluted training data with specific triggers. As existing episodes mainly focused on attack success rate with patch-based samples, defense algorithms can easily detect…

Cryptography and Security · Computer Science 2021-01-11 Jinyin Chen , Longyuan Zhang , Haibin Zheng , Xueke Wang , Zhaoyan Ming

Fast-rate models are essential for control design, specifically to address intersample behavior. The aim of this paper is to develop a frequency-domain non-parametric identification technique to estimate fast-rate models of systems that…

Systems and Control · Electrical Eng. & Systems 2025-11-07 Max van Haren , Lennart Blanken , Koen Classens , Tom Oomen

We generalize a stochastic model of DNA replication to the case where replication-origin-initiation rates vary locally along the genome and with time. Using this generalized model, we address the inverse problem of inferring initiation…

Quantitative Methods · Quantitative Biology 2015-04-02 A. Baker , J. Bechhoefer
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