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Generative adversarial networks (GANs) have been shown to produce realistic samples from high-dimensional distributions, but training them is considered hard. A possible explanation for training instabilities is the inherent imbalance…

Machine Learning · Statistics 2018-07-12 Mehdi S. M. Sajjadi , Giambattista Parascandolo , Arash Mehrjou , Bernhard Schölkopf

Generating graphs that are similar to real ones is an open problem, while the similarity notion is quite elusive and hard to formalize. In this paper, we focus on sparse digraphs and propose SDG, an algorithm that aims at generating graphs…

Data Structures and Algorithms · Computer Science 2018-07-06 Georgios Papoudakis , Philippe Preux , Martin Monperrus

Predicting genetic perturbations enables the identification of potentially crucial genes prior to wet-lab experiments, significantly improving overall experimental efficiency. Since genes are the foundation of cellular life, building gene…

Quantitative Methods · Quantitative Biology 2025-05-09 Changxi Chi , Jun Xia , Jingbo Zhou , Jiabei Cheng , Chang Yu , Stan Z. Li

Understanding network structure and having access to realistic graphs plays a central role in computer and social networks research. In this paper, we propose a complete, and practical methodology for generating graphs that resemble a real…

Social and Information Networks · Computer Science 2012-08-21 Minas Gjoka , Maciej Kurant , Athina Markopoulou

The objective of privacy-preserving synthetic graph publishing is to safeguard individuals' privacy while retaining the utility of original data. Most existing methods focus on graph neural networks under differential privacy (DP), and yet…

Databases · Computer Science 2025-01-07 Sen Zhang , Haibo Hu , Qingqing Ye , Jianliang Xu

Genetic mutations can cause disease by disrupting normal gene function. Identifying the disease-causing mutations from millions of genetic variants within an individual patient is a challenging problem. Computational methods which can…

Machine Learning · Computer Science 2021-06-28 Jun Cheng , Carolin Lawrence , Mathias Niepert

In recent years hypergraphs have emerged as a powerful tool to study systems with multi-body interactions which cannot be trivially reduced to pairs. While highly structured methods to generate synthetic data have proved fundamental for the…

Social and Information Networks · Computer Science 2024-10-10 Nicolò Ruggeri , Federico Battiston , Caterina De Bacco

With the development of graph applications, generative models for graphs have been more crucial. Classically, stochastic models that generate graphs with a pre-defined probability of edges and nodes have been studied. Recently, some models…

Machine Learning · Computer Science 2023-04-07 Shohei Nakazawa , Yoshiki Sato , Kenji Nakagawa , Sho Tsugawa , Kohei Watabe

Heterogeneous graphs are ubiquitous data structures that can inherently capture multi-type and multi-modal interactions between objects. In recent years, research on encoding heterogeneous graph into latent representations have enjoyed a…

Social and Information Networks · Computer Science 2023-07-06 Chen Ling , Carl Yang , Liang Zhao

Designing molecules with specific properties is a long-lasting research problem and is central to advancing crucial domains such as drug discovery and material science. Recent advances in deep graph generative models treat molecule design…

Machine Learning · Computer Science 2022-03-02 Yuanqi Du , Xiaojie Guo , Amarda Shehu , Liang Zhao

Many methods for automated software test generation, including some that explicitly use machine learning (and some that use ML more broadly conceived) derive new tests from existing tests (often referred to as seeds). Often, the seed tests…

Machine Learning · Statistics 2017-11-16 Alex Groce , Josie Holmes

Hypergraphs are powerful mathematical structures that can model complex, high-order relationships in various domains, including social networks, bioinformatics, and recommender systems. However, generating realistic and diverse hypergraphs…

Machine Learning · Computer Science 2026-03-11 Dorian Gailhard , Enzo Tartaglione , Lirida Naviner , Jhony H. Giraldo

One of the biggest huddles faced by researchers studying algorithms for massive graphs is the lack of large input graphs that are essential for the development and test of the graph algorithms. This paper proposes two efficient and highly…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-03-22 Andy Yoo , Keith Henderson

We propose a framework for generating samples from a probability distribution that differs from the probability distribution of the training set. We use an adversarial process that simultaneously trains three networks, a generator and two…

Machine Learning · Computer Science 2021-02-10 Gabriele Di Cerbo , Ali Hirsa , Ahmad Shayaan

A fundamental challenge in graph learning is understanding how models generalize to new, unseen graphs. While synthetic benchmarks offer controlled settings for analysis, existing approaches are confined to single-graph, transductive…

Machine Learning · Computer Science 2026-03-03 Louis Van Langendonck , Guillermo Bernárdez , Nina Miolane , Pere Barlet-Ros

Graph is a prevalent discrete data structure, whose generation has wide applications such as drug discovery and circuit design. Diffusion generative models, as an emerging research focus, have been applied to graph generation tasks.…

Machine Learning · Computer Science 2024-11-05 Zhe Xu , Ruizhong Qiu , Yuzhong Chen , Huiyuan Chen , Xiran Fan , Menghai Pan , Zhichen Zeng , Mahashweta Das , Hanghang Tong

The abundance of interconnected data has fueled the design and implementation of graph generators reproducing real-world linking properties, or gauging the effectiveness of graph algorithms, techniques and applications manipulating these…

Databases · Computer Science 2020-01-23 Angela Bonifati , Irena Holubová , Arnau Prat-Pérez , Sherif Sakr

Generation of graphs is a major challenge for real-world tasks that require understanding the complex nature of their non-Euclidean structures. Although diffusion models have achieved notable success in graph generation recently, they are…

Machine Learning · Computer Science 2024-06-04 Jaehyeong Jo , Dongki Kim , Sung Ju Hwang

Gene interaction graphs aim to capture various relationships between genes and can represent decades of biology research. When trying to make predictions from genomic data, those graphs could be used to overcome the curse of dimensionality…

Learning low-dimensional representations on graphs has proved to be effective in various downstream tasks. However, noises prevail in real-world networks, which compromise networks to a large extent in that edges in networks propagate…

Social and Information Networks · Computer Science 2020-12-07 Junshan Wang , Ziyao Li , Qingqing Long , Weiyu Zhang , Guojie Song , Chuan Shi
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