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The synthesis of ATP, life's 'universal energy currency', is the most prevalent chemical reaction in biological systems, and is responsible for fueling nearly all cellular processes, from nerve impulse propagation to DNA synthesis. ATP…

Biological Physics · Physics 2021-04-06 Jasmine A Nirody , Itay Budin , Padmini Rangamani

Adenosine-5'-triphosphate (ATP) plays a crucial role in many biocatalytic reactions and its regeneration can influence the performance of a related enzymatic reaction significantly. Here, we established an electrochemically coupled ATP…

Biomolecules · Quantitative Biology 2023-07-13 Regine Siedentop , Tobias Prenzel , Siegfried R. Waldvogel , Katrin Rosenthal , Stephan Lütz

Recent studies reported that adenosine triphosphate (ATP) could inhibit as well as enhance the phase separation in prion-like proteins. The molecular mechanism underlying such a puzzling phenomenon remains elusive. Here, taking the fused in…

Soft Condensed Matter · Physics 2022-09-22 Chun-Lai Ren , Yue Shan , Pengfei Zhang , Hong-Ming Ding , Yu-qiang Ma

The cytoskeletal component actomyosin is a canonical example of active matter since the powerstroke cycle locally converts chemical energy in the form of adenoside triphosphate (ATP) into mechanical work for remodelling. Observing myosin II…

Biological Physics · Physics 2024-12-05 Sami C. Al-Izzi , Sedigheh Ghanbarzadeh Nodehi , Darius V. Köster , Richard G. Morris

We demonstrate asymmetric enzyme kinetics of a biomolecular motor F1-ATPase between synthesis and hydrolysis of adenosine triphosphate (ATP). Our experiments show that ATP hydrolysis follows Michaelis-Menten kinetics, but ATP synthesis,…

Biological Physics · Physics 2025-06-04 Yohei Nakayama , Shoichi Toyabe

The mitogen-activated protein kinase (MAPK) signaling cascade, an evolutionarily conserved motif present in all eukaryotic cells, is involved in coordinating critical cell-fate decisions, regulating protein synthesis, and mediating learning…

Subcellular Processes · Quantitative Biology 2024-06-11 Tanmay Mitra , Shakti N. Menon , Sitabhra Sinha

The nucleotides ATP and ADP regulate many aspects of endothelial cell (EC) biology, including intracellular calcium concentrations, focal adhesion activation, cytoskeletal organization, and cellular motility. In vivo, ECs are constantly…

Biological Physics · Physics 2018-09-05 Ezio Di Costanzo , Abdul I. Barakat , Giuseppe Pontrelli

Recent experimental studies strongly suggest the influence of glial purinergic transmission in the modulation of synaptic dynamics. By releasing adenosine triphosphate (ATP), which accumulates as adenosine, astrocytes tonically suppressed…

Neurons and Cognition · Quantitative Biology 2009-09-17 Hamid Reza Noori

The theory describing action of medicines explored in this paper is based on assumption that vital activity of the cell may be described in terms of the model of two states: resting state and excitation. According to available physiological…

Biological Physics · Physics 2012-08-21 V. V. Matveev , D. V. Prokhorenko

Due to inter-subunit communication, multisubunit enzymes usually hydrolyze ATP in a concerted fashion. However, so far the principle of this process remains poorly understood. In this study, from the viewpoint of statistical thermodynamics,…

Mathematical Physics · Physics 2015-06-04 Yunxin Zhang

Incubation with noradrenaline (norepinephrine) of isolated membranes of rat's brain corpus striatum and cortex, showed that ionic-magnesium (Mg2+) is required for the neurotransmitter activatory response of Adenylate Cyclase [ATP…

Other Quantitative Biology · Quantitative Biology 2010-12-16 Alfred Bennun

The catalytic conversion ATP + AMP -> 2ADP by the enzyme adenylate kinase (ADK) involves the binding of one ATP molecule to the LID domain and one AMP molecule to the NMP domain. The latter is followed by a phosphate transfer, and then the…

Statistical Mechanics · Physics 2010-12-22 Bharat V. Adkar , Biman Jana , Biman Bagchi

We study the high-frequency micro-mechanical response of suspensions composed by cardiac and skeletal muscle myosin by optical trapping interferometry. We observe that in low ionic strength solutions upon the addition of magnesium adenosine…

Soft Condensed Matter · Physics 2024-10-15 Pablo Domínguez-García , Jose R. Pinto , Ana Akrap , Sylvia Jeney

Mitochondria are critical organelles in eukaryotes that produce the energy currency ATP. In nerve axons, mitochondria are known to align at almost regular intervals to maintain a constant ATP concentration, but little is known about the…

Biological Physics · Physics 2023-05-10 Masashi K. Kajita , Yoshiyuki Konishi , Tetsuhiro S. Hatakeyama

To sustain metabolism, intracellular ATP concentration must be regulated within an appropriate range. This coordination is achieved through the function of the AMP-activated protein kinase (AMPK), a cellular "fuel gauge" that is expressed…

Tissues and Organs · Quantitative Biology 2019-11-07 Benoit Viollet

Nonlinear systems driven by recurrent signals are known to exhibit complex dynamical responses which, in the physiological context, can have important functional consequences. One of the simplest biological systems that is exposed to such…

Subcellular Processes · Quantitative Biology 2018-07-04 Tanmay Mitra , Shakti N. Menon , Sitabhra Sinha

ATP synthase's intrinsic molecular electrostatic potential (MESP) adds constructively to, and hence reinforces, the chemiosmotic voltage. This ATP synthase voltage represents a new free energy term that appears to have been overlooked. This…

Mismatch repair is a critical step in DNA replication that occurs after base selection and proofreading, significantly increasing fidelity. However, the mechanism of mismatch recognition has not been established for any repair enzyme.…

Biological Physics · Physics 2024-04-09 Nianqin Zhang , Yongjun Zhang

Living organisms continuously harness energy to perform complex functions for their adaptation and survival while part of that energy is dissipated in the form of heat or chemical waste. Determining the energetic cost and the efficiency of…

Molecular Networks · Quantitative Biology 2023-08-07 Valérie Voorsluijs , Francesco Avanzini , Gianmaria Falasco , Massimiliano Esposito , Alexander Skupin

Protein assembly plays an important role in the regulation of biological systems. The cytoskeleton assembly activity is provided by the binding cofactors GTP (guanidine triphosphate) or ATP(adenosine triphosphate) to monomeric protein, and…

Subcellular Processes · Quantitative Biology 2015-10-13 Tatsuaki Tsuruyama
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