Related papers: Developing a Mathematical Model for Bobbin Lace
We consider the problem of uniformly generating a spanning tree, of a connected undirected graph. This process is useful to compute statistics, namely for phylogenetic trees. We describe a Markov chain for producing these trees. For cycle…
The internal structure of adhesive tapes determines the effective mechanical properties. This holds true especially for blended systems, here consisting of acrylate and rubber phases. In this note, we propose a lattice-based model to study…
An automated prepreg fabric draping system is being developed which consists of an array of actuated grippers. It has the ability to pick up a fabric ply and place it onto a double-curved mold surface. A previous research effort based on a…
Construction of phylogenetic trees and networks for extant species from their characters represents one of the key problems in phylogenomics. While solution to this problem is not always uniquely defined and there exist multiple methods for…
Machine Learning produces efficient decision and prediction models based on input-output data only. Such models have the form of decision trees or neural nets and are far from transparent analytical models, based on mathematical formulas.…
Tanglegrams are a special class of graphs appearing in applications concerning cospeciation and coevolution in biology and computer science. They are formed by identifying the leaves of two rooted binary trees. We give an explicit formula…
We propose a new method to construct maximin distance designs with arbitrary number of dimensions and points. The proposed designs hold interleaved-layer structures and are by far the best maximin distance designs in four or more…
Graphs are ubiquitous due to their flexibility in representing social and technological systems as networks of interacting elements. Graph representation learning methods, such as node embeddings, are powerful approaches to map nodes into a…
We present a network model in which words over a specific alphabet, called {\it structures}, are associated to each node and undirected edges are added depending on some distance between different structures. It is shown that this model can…
Fixed points of recurrent neural networks can be leveraged to store and generate information. These fixed points can be captured by the Boltzmann-Gibbs measure, which leads to neural Langevin dynamics that can be used for sampling and…
A ribbon is, intuitively, a smooth mapping of an annulus $S^1 \times I$ in 3-space having constant width $\varepsilon$. This can be formalized as a triple $(x,\varepsilon, \mathbf{u})$ where $x$ is smooth curve in 3-space and $\mathbf{u}$…
For machines to interact with the physical world, they must understand the physical properties of objects and materials they encounter. We use fabrics as an example of a deformable material with a rich set of mechanical properties. A thin…
A barcode is a finite multiset of intervals on the real line, $B = \{ (b_i, d_i)\}_{i=1}^n$. Barcodes are important objects in topological data analysis, where they serve as summaries of the persistent homology groups of a filtration. The…
Network embedding methods aim at learning low-dimensional latent representation of nodes in a network. While achieving competitive performance on a variety of network inference tasks such as node classification and link prediction, these…
Recent advances in coarse-grained lattice and off-lattice protein models are reviewed. The sequence dependence of thermodynamical folding properties are investigated and evidence for non-randomness of the binary sequences of good folders…
In a class of carbon-based materials called polymerized triptycene, which consist of triptycene molecules and phenyls, exotic electronic structures such as Dirac cones and flat bands arise from the kagome-type network. In this paper, we…
BioFabrics were introduced by Longabaugh in 2012 as a way to draw large graphs in a clear and uncluttered manner. The visual quality of BioFabrics crucially depends on the order of vertices and edges, which can be chosen independently.…
The notion of a braided chord diagram is introduced and studied. An equivalence relation is given which identifies all braidings of a fixed chord diagram. It is shown that finite-type invariants are stratified by braid index for knots which…
Machine knitted textiles are complex multi-scale material structures increasingly important in many industries, including consumer products, architecture, composites, medical, and military. Computational modeling, simulation, and design of…
Can the cross product be generalized? Why are the trace and determinant so important in matrix theory? What do all the coefficients of the characteristic polynomial represent? This paper describes a technique for `doodling' equations from…