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We consider the inference of the structure of an undirected graphical model in an exact Bayesian framework. More specifically we aim at achieving the inference with close-form posteriors, avoiding any sampling step. This task would be…

Machine Learning · Statistics 2017-05-02 Loïc Schwaller , Stéphane Robin , Michael Stumpf

While modern biotechnologies allow synthesizing new proteins and function measurements at scale, efficiently exploring a protein sequence space and engineering it remains a daunting task due to the vast sequence space of any given protein.…

Biomolecules · Quantitative Biology 2024-01-15 Jiahao Qiu , Hui Yuan , Jinghong Zhang , Wentao Chen , Huazheng Wang , Mengdi Wang

We define a special case of tree decompositions for planar graphs that respect a given embedding of the graph. We study the analogous width of the resulting decomposition we call the embedded-width of a plane graph. We show both upper…

Discrete Mathematics · Computer Science 2017-03-23 Glencora Borradaile , Jeff Erickson , Hung Le , Robbie Weber

In recent years, there is a growing interest in learning Bayesian networks with continuous variables. Learning the structure of such networks is a computationally expensive procedure, which limits most applications to parameter learning.…

Machine Learning · Computer Science 2012-07-19 Iftach Nachman , Gal Elidan , Nir Friedman

The combination of Monte Carlo tree search and neural networks has revolutionized online planning. As neural network approximations are often imperfect, we ask whether uncertainty estimates about the network outputs could be used to improve…

Artificial Intelligence · Computer Science 2024-06-05 Nir Greshler , David Ben Eli , Carmel Rabinovitz , Gabi Guetta , Liran Gispan , Guy Zohar , Aviv Tamar

There has been a lot of recent work on Bayesian methods for reinforcement learning exhibiting near-optimal online performance. The main obstacle facing such methods is that in most problems of interest, the optimal solution involves…

Machine Learning · Computer Science 2009-12-31 Christos Dimitrakakis

A Bayesian network is a directed acyclic graph that represents statistical dependencies between variables of a joint probability distribution. A fundamental task in data science is to learn a Bayesian network from observed data.…

Data Structures and Algorithms · Computer Science 2021-05-21 Niels Grüttemeier , Christian Komusiewicz , Nils Morawietz

Many algorithms for score-based Bayesian network structure learning (BNSL), in particular exact ones, take as input a collection of potentially optimal parent sets for each variable in the data. Constructing such collections naively is…

Machine Learning · Statistics 2020-08-04 Alvaro H. C. Correia , James Cussens , Cassio de Campos

One of the most challenging tasks when adopting Bayesian Networks (BNs) is the one of learning their structure from data. This task is complicated by the huge search space of possible solutions, and by the fact that the problem is NP-hard.…

Machine Learning · Computer Science 2018-08-07 Stefano Beretta , Mauro Castelli , Ivo Goncalves , Roberto Henriques , Daniele Ramazzotti

Structure learning algorithms that learn the graph of a Bayesian network from observational data often do so by assuming the data correctly reflect the true distribution of the variables. However, this assumption does not hold in the…

Artificial Intelligence · Computer Science 2020-11-20 Yang Liu , Anthony C. Constantinou , ZhiGao Guo

Exact algorithms for learning Bayesian networks guarantee to find provably optimal networks. However, they may fail in difficult learning tasks due to limited time or memory. In this research we adapt several anytime heuristic search-based…

Artificial Intelligence · Computer Science 2013-09-27 Brandon Malone , Changhe Yuan

Estimating the structure of directed acyclic graphs (DAGs, also known as Bayesian networks) is a challenging problem since the search space of DAGs is combinatorial and scales superexponentially with the number of nodes. Existing approaches…

Machine Learning · Statistics 2018-11-06 Xun Zheng , Bryon Aragam , Pradeep Ravikumar , Eric P. Xing

We present four novel approximation algorithms for finding triangulation of minimum treewidth. Two of the algorithms improve on the running times of algorithms by Robertson and Seymour, and Becker and Geiger that approximate the optimum by…

Data Structures and Algorithms · Computer Science 2013-01-14 Eyal Amir

We develop a framework for applying treewidth-based dynamic programming on graphs with "hybrid structure", i.e., with parts that may not have small treewidth but instead possess other structural properties. Informally, this is achieved by…

Data Structures and Algorithms · Computer Science 2019-08-28 Eduard Eiben , Robert Ganian , Thekla Hamm , O-joung Kwon

MAP is the problem of finding a most probable instantiation of a set of variables in a Bayesian network given some evidence. Unlike computing posterior probabilities, or MPE (a special case of MAP), the time and space complexity of…

Artificial Intelligence · Computer Science 2012-12-12 James D. Park , Adnan Darwiche

This paper extends the work in [Suzuki, 1996] and presents an efficient depth-first branch-and-bound algorithm for learning Bayesian network structures, based on the minimum description length (MDL) principle, for a given (consistent)…

Artificial Intelligence · Computer Science 2013-01-18 Jin Tian

This paper addresses the problem of learning a sparse structure Bayesian network from high-dimensional discrete data. Compared to continuous Bayesian networks, learning a discrete Bayesian network is a challenging problem due to the large…

Machine Learning · Computer Science 2022-09-27 Nazanin Shajoonnezhad , Amin Nikanjam

The graph of a Bayesian Network (BN) can be machine learned, determined by causal knowledge, or a combination of both. In disciplines like bioinformatics, applying BN structure learning algorithms can reveal new insights that would…

Artificial Intelligence · Computer Science 2021-02-03 Anthony C. Constantinou , Norman Fenton , Martin Neil

Decision trees and their ensembles are popular in machine learning as easy-to-understand models. Several techniques have been proposed in the literature for learning tree-based classifiers, with different techniques working well for data…

Machine Learning · Computer Science 2025-05-20 Maria-Florina Balcan , Dravyansh Sharma

Sparse structures are frequently sought when pursuing tractability in optimization problems. They are exploited from both theoretical and computational perspectives to handle complex problems that become manageable when sparsity is present.…

Discrete Mathematics · Computer Science 2019-03-21 Yuri Faenza , Gonzalo Muñoz , Sebastian Pokutta