Related papers: An efficient algorithm for computing the edit dist…
We present an efficient algorithm for finding all approximate occurrences of a given pattern $p$ of length $m$ in a text $t$ of length $n$ allowing for translocations of equal length adjacent factors and inversions of factors. The algorithm…
We consider the approximate pattern matching problem under the edit distance. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to find the starting positions of all substrings of $T$ that can be…
Given a non-deterministic finite automaton (NFA) A with m states, and a natural number n (presented in unary), the #NFA problem asks to determine the size of the set L(A_n) of words of length n accepted by A. While the corresponding…
Under polynomial time reduction, the maximum likelihood decoding of a linear code is equivalent to computing the error distance of a received word. It is known that the decoding complexity of standard Reed-Solomon codes at certain radius is…
#NFA refers to the problem of counting the words of length $n$ accepted by a non-deterministic finite automaton. #NFA is #P-hard, and although fully-polynomial-time randomized approximation schemes (FPRAS) exist, they are all impractical.…
Natural language correction has the potential to help language learners improve their writing skills. While approaches with separate classifiers for different error types have high precision, they do not flexibly handle errors such as…
A Wheeler automaton is a finite state automaton whose states admit a total Wheeler order, reflecting the co-lexicographic order of the strings labeling source-to-node paths. A Wheeler language is a regular language admitting an accepting…
The problem of computing the edit-distance between a string and a finite automaton arises in a variety of applications in computational biology, text processing, and speech recognition. This paper presents linear-space algorithms for…
Given a pair of strings, the problems of computing their Longest Common Subsequence and Edit Distance have been extensively studied for decades. For exact algorithms, LCS and Edit Distance (with character insertions and deletions) are…
Although real-world text datasets, such as DNA sequences, are far from being uniformly random, average-case string searching algorithms perform significantly better than worst-case ones in most applications of interest. In this paper, we…
An absent word of a word y of length n is a word that does not occur in y. It is a minimal absent word if all its proper factors occur in y. Minimal absent words have been computed in genomes of organisms from all domains of life; their…
We introduce fast-decodable indexing schemes for edit distance which can be used to speed up edit distance computations to near-linear time if one of the strings is indexed by an indexing string $I$. In particular, for every length $n$ and…
The problem of error control in random linear network coding is addressed from a matrix perspective that is closely related to the subspace perspective of K\"otter and Kschischang. A large class of constant-dimension subspace codes is…
The edit distance is a basic string similarity measure used in many applications such as text mining, signal processing, bioinformatics, and so on. However, the computational cost can be a problem when we repeat many distance calculations…
We propose Seq2Edits, an open-vocabulary approach to sequence editing for natural language processing (NLP) tasks with a high degree of overlap between input and output texts. In this approach, each sequence-to-sequence transduction is…
Matching and retrieving previously translated segments from a Translation Memory is the key functionality in Translation Memories systems. However this matching and retrieving process is still limited to algorithms based on edit distance…
We consider two natural problems about nondeterministic finite automata. First, given such an automaton M of n states, and a length l, does M accept a word of length l? We show that the classic problem of triangle-free graph recognition…
We study the task, for a given language $L$, of enumerating the (generally infinite) sequence of its words, without repetitions, while bounding the delay between two consecutive words. To allow for delay bounds that do not depend on the…
A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…
Let PT-DFA mean a deterministic finite automaton whose transition relation is a partial function. We present an algorithm for minimizing a PT-DFA in $O(m \lg n)$ time and $O(m+n+\alpha)$ memory, where $n$ is the number of states, $m$ is the…