Related papers: ACO Implementation for Sequence Alignment with Gen…
The issue of optimizing queries is a cost-sensitive process and with respect to the number of associated tables in a query, its number of permutations grows exponentially. On one hand, in comparison with other operators in relational…
The paper attempts to find numerical solutions of Diophantine equations, a challenging problem as there are no general methods to find solutions of such equations. It uses the metaphor of foraging habits of real ants. The ant colony…
Mutual correlation between segments of DNA or protein sequences can be detected by Smith-Waterman local alignments. We present a statistical analysis of alignment of such sequences, based on a recent scaling theory. A new fidelity measure…
Feature selection refers to the problem of selecting relevant features which produce the most predictive outcome. In particular, feature selection task is involved in datasets containing huge number of features. Rough set theory has been…
Bayesian Optimization (BO) is a common solution to search optimal hyperparameters based on sample observations of a machine learning model. Existing BO algorithms could converge slowly even collapse when the potential observation noise…
Deep Learning models have experienced exponential growth in complexity and resource demands in recent years. Accelerating these models for efficient execution on resource-constrained devices has become more crucial than ever. Two notable…
This paper explores the use of the Artificial Bee Colony (ABC) algorithm to compute threshold selection for image segmentation. ABC is a heuristic algorithm motivated by the intelligent behavior of honey-bees which has been successfully…
Sequence-to-Sequence models were introduced to tackle many real-life problems like machine translation, summarization, image captioning, etc. The standard optimization algorithms are mainly based on example-to-example matching like maximum…
We propose a framework for online meta-optimization of parameters that govern optimization, called Amortized Proximal Optimization (APO). We first interpret various existing neural network optimizers as approximate stochastic proximal point…
Assembling a gene from candidate exons is an important problem in computational biology. Among the most successful approaches to this problem is \emph{spliced alignment}, proposed by Gelfand et al., which scores different candidate exon…
The problem of similarity search is one of the main problems in computer science. This problem has many applications in text-retrieval, web search, computational biology, bioinformatics and others. Similarity between two data objects can be…
The statistical properties of local alignment algorithms with gaps are analyzed theoretically for uncorrelated and correlated DNA sequences. In the vicinity of the log-linear phase transition, the statistics of alignment with gaps is shown…
Hyperparameter tuning is a critical yet computationally expensive step in training neural networks, particularly when the search space is high dimensional and nonconvex. Metaheuristic optimization algorithms are often used for this purpose…
The process of Vertical handoff has become one of the major components of today's wireless environment due to the availability of the vast variety of signals. The decision for a handoff should be performed catering to the needs of the…
In this paper, a novel swarm intelligent algorithm is proposed called ant nesting algorithm (ANA). The algorithm is inspired by Leptothorax ants and mimics the behavior of ants searching for positions to deposit grains while building a new…
This study presents Neural Focused Ant Colony Optimization (NeuFACO), a non-autoregressive framework for the Traveling Salesman Problem (TSP) that combines advanced reinforcement learning with enhanced Ant Colony Optimization (ACO). NeuFACO…
Sequence comparison is a widely used computational technique in modern molecular biology. In spite of the frequent use of sequence comparisons the important problem of assigning statistical significance to a given degree of similarity is…
The alignment of biological sequences such as DNA, RNA, and proteins, is one of the basic tools that allow to detect evolutionary patterns, as well as functional/structural characterizations between homologous sequences in different…
Quantum ant colony optimization (QACO) has drew much attention since it combines the advantages of quantum computing and ant colony optimization (ACO) algorithm overcoming some limitations of the traditional ACO algorithm. However,due to…
The paper introduces D-CODE, a new framework blending Data Colony Optimization (DCO) algorithms inspired by biological colonies' collective behaviours with Dynamic Efficiency (DE) models for real-time adaptation. DCO utilizes metaheuristic…