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Summary: BWA-MEM is a new alignment algorithm for aligning sequence reads or long query sequences against a large reference genome such as human. It automatically chooses between local and end-to-end alignments, supports paired-end reads…

Genomics · Quantitative Biology 2013-05-28 Heng Li

It is not rare that the performance of one metaheuristic algorithm can be improved by incorporating ideas taken from another. In this article we present how Simulated Annealing (SA) can be used to improve the efficiency of the Ant Colony…

Artificial Intelligence · Computer Science 2017-05-03 Rafał Skinderowicz

Ant Colony Optimization (ACO) has time complexity O(t*m*N*N), and its typical application is to solve Traveling Salesman Problem (TSP), where t, m, and N denotes the iteration number, number of ants, number of cities respectively. Cutting…

Neural and Evolutionary Computing · Computer Science 2009-07-07 Chao-Yang Pang , Wei Hu , Xia Li , Be-Qiong Hu

Ant Colony Optimization (ACO) is a well-known method inspired by the foraging behavior of ants and is extensively used to solve combinatorial optimization problems. In this paper, we first consider a general framework based on the concept…

Data Structures and Algorithms · Computer Science 2025-01-22 Bodo Manthey , Jesse van Rhijn , Ashkan Safari , Tjark Vredeveld

We study the problem of approximate near neighbor (ANN) search and show the following results: - An improved framework for solving the ANN problem using locality-sensitive hashing, reducing the number of evaluations of locality-sensitive…

Data Structures and Algorithms · Computer Science 2019-06-25 Tobias Christiani

Ant Colony Optimization (ACO) is a metaheuristic for solving difficult discrete optimization problems. This paper presents a deterministic model based on differential equation to analyze the dynamics of basic Ant System algorithm.…

Other Computer Science · Computer Science 2016-11-15 Ayan Acharya , Deepyaman Maiti , Amit Konar , Ramadoss Janarthanan

Protein similarity searches are a routine job for molecular biologists where a query sequence of amino acids needs to be compared and ranked against an ever-growing database of proteins. All available algorithms in this field can be grouped…

Computational Engineering, Finance, and Science · Computer Science 2015-08-27 Akash Nag , Sunil Karforma

This study introduces an innovative methodology for the planning of metro network routes within the urban environment of Chennai, Tamil Nadu, India. A comparative analysis of the modified Ant Colony Optimization (ACO) method (previously…

Neural and Evolutionary Computing · Computer Science 2024-07-08 Hariram Sampath Kumar , Archana Singh , Manish Kumar Ojha

In this paper, we investigate nonlinear optimization problems whose constraints are defined as fuzzy relational equations (FRE) with max-min composition. Since the feasible solution set of the FRE is often a non-convex set and the…

Neural and Evolutionary Computing · Computer Science 2024-05-27 Amin Ghodousian , Sara Zal

This paper aims to introduce the Ant hill colonization optimization algorithm(AHCOA) to the electromagnetics and antenna community. The ant hill is built by special species of ants known as formicas ants(also meadow ants, fire ants and…

Neural and Evolutionary Computing · Computer Science 2022-11-30 Sunit Shantanu Digamber Fulari

We introduce a framework for applying metaheuristic algorithms, such as ant colony optimization (ACO), to combinatorial optimization problems (COPs) like the traveling salesman problem (TSP). The framework consists of three sequential…

Neural and Evolutionary Computing · Computer Science 2025-10-07 Ethan Davis

Detecting communities from complex networks has recently triggered great interest. Aiming at this problem, a new ant colony optimization strategy building on the Markov random walks theory, which is named as MACO, is proposed in this paper.…

Social and Information Networks · Computer Science 2013-03-26 Di Jin , Dayou Liu , Bo Yang , Jie Liu , Dongxiao He

Ant Colony Optimization (ACO) is renowned for its effectiveness in solving Traveling Salesman Problems, yet it faces computational challenges in CPU-based environments, particularly with large-scale instances. In response, we introduce a…

Neural and Evolutionary Computing · Computer Science 2024-04-15 Luming Yang , Tao Jiang , Ran Cheng

Ant Colony System (ACS) is a distributed (agent- based) algorithm which has been widely studied on the Symmetric Travelling Salesman Problem (TSP). The optimum parameters for this algorithm have to be found by trial and error. We use a…

Optimization and Control · Mathematics 2018-03-23 D Gómez-Cabrero , D. N. Ranasinghe

A range of complicated real-world problems have inspired the development of several optimization methods. Here, a novel hybrid version of the Ant colony optimization (ACO) method is developed using the sample space reduction technique of…

Neural and Evolutionary Computing · Computer Science 2023-03-31 Ishaan R Kale , Mandar S Sapre , Ayush Khedkar , Kaustubh Dhamankar , Abhinav Anand , Aayushi Singh

Quantum ant colony optimization (QACO) has drew much attention since it combines the advantages of quantum computing and ant colony optimization (ACO) algorithms and overcomes some limitations of the traditional ACO algorithm. However, due…

Quantum Physics · Physics 2024-03-04 Qian Qiu , Mohan Wu , Qichun Sun , Xiaogang Li , Hua Xu

To construct a robot that can walk as efficiently and steadily as humans or other legged animals, we develop an enhanced elitist-mutated ant colony optimization~(EACO) algorithm with genetic and crossover operators in real-time applications…

Neural and Evolutionary Computing · Computer Science 2020-10-12 Jingan Yang , Yang Peng

Column generation (CG) is a powerful technique for solving optimization problems that involve a large number of variables or columns. This technique begins by solving a smaller problem with a subset of columns and gradually generates…

Neural and Evolutionary Computing · Computer Science 2024-07-03 Hongjie Xu , Yunzhuang Shen , Yuan Sun , Xiaodong Li

Swarm Intelligence algorithms have gained significant attention in recent years as a means of solving complex and non-deterministic problems. These algorithms are inspired by the collective behavior of natural creatures, and they simulate…

Computation and Language · Computer Science 2023-03-30 Amirhossein Mohammadi , Sara Hajiaghajani , Mohammad Bahrani

An automated sizing approach for analog circuits using evolutionary algorithms is presented in this paper. A targeted search of the search space has been implemented using a particle generation function and a repair-bounds function that has…

Neural and Evolutionary Computing · Computer Science 2023-10-20 Ria Rashid , Gopavaram Raghunath , Vasant Badugu , Nandakumar Nambath