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Related papers: Semiflexible polymer rings on topographically and …

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Ring, or cyclic, polymers have unique properties compared to linear polymers, due to their topologically closed structure that has no beginning or end. Experimental measurements on molecular ring polymers are challenging due to their…

Soft Condensed Matter · Physics 2023-03-15 Ruben Verweij , Julio Melio , Indrani Chakraborty , Daniela J Kraft

Rings comprising chemically bonded atoms are essential topological motifs for the structural ordering of network-forming materials. Quantification of such larger motifs beyond short-range pair correlation is essential for understanding the…

Materials Science · Physics 2023-11-15 Motoki Shiga , Akihiko Hirata , Yohei Onodera , Hirokazu Masai

Taking into account the well known correspondence between the field theoretical O(n)-vector model in the limit $n\to 0$ and the behavior of long-flexible polymer chains in a good solvent the investigation of ideal polymer chains adsorption…

Soft Condensed Matter · Physics 2012-09-25 Zoryana Usatenko

We investigate the topological properties of the helical atomic chains occurring in elemental selenium and tellurium. We postulate a realistic model that includes spin-orbit interaction and show this to be topologically non-trivial, with a…

From understanding the sand on the beach to the foam on your beer, soft sphere simulations have been crucial to the study of the amorphous world around us. However, many of the materials we interact with on a daily basis aren't comprised of…

Soft Condensed Matter · Physics 2024-03-18 R. C. Dennis

Quasi-periodic structures of quasicrystals yield novel effects in diverse systems. However, there is little investigation on employing quasi-periodic structures in the morphology control. Here, we show the use of quasi-periodic surface…

Applied Physics · Physics 2017-07-17 Enhui Chen , Quanzi Yuan , Ya-Pu Zhao

We investigate the folding and forced-unbinding transitions of adsorbed semiflexible polymer chains using theory and simulations. These processes describe biologically relevant phenomena that include adhesive interactions between proteins…

Soft Condensed Matter · Physics 2007-05-23 V. Barsegov , D. Thirumalai

Segregation patterns of size-bidisperse particle mixtures in a fully-three-dimensional flow produced by alternately rotating a spherical tumbler about two perpendicular axes are studied over a range of particle sizes and volume ratios using…

Soft Condensed Matter · Physics 2019-07-03 Mengqi Yu , Paul B. Umbanhowar , Julio M. Ottino , Richard M. Lueptow

We study the adsorption of semiflexible polymers such as polyelectrolytes or DNA on planar and curved substrates, e.g., spheres or washboard substrates via short-range potentials using extensive Monte-Carlo simulations, scaling arguments,…

Soft Condensed Matter · Physics 2015-08-19 Tobias A. Kampmann , Horst-Holger Boltz , Jan Kierfeld

We analyse the conformational behaviour of a linear semiflexible homo-polymer chain confined by two geometrical constraints under a good solvent condition in two dimensions. The constraints are stair shaped impenetrable surfaces. The…

Soft Condensed Matter · Physics 2014-07-14 Pramod Kumar Mishra

A system of two self and mutual interacting ring polymers, close together in space, can display several competing equilibrium phases and phase transitions. Using Monte Carlo simulations and combinatorial arguments on a corresponding lattice…

Soft Condensed Matter · Physics 2026-04-17 EJ Janse van Rensburg , E Orlandini , MC Tesi , SG Whittington

The structure of flexible polymers endgrafted in cylindrical pores of diameter D is studied as a function of chain length N and grafting density \sigma, assuming good solvent conditions. A phenomenological scaling theory, describing the…

Soft Condensed Matter · Physics 2009-11-11 D. I. Dimitrov , A. Milchev , K. Binder

Protection of topological surface states by reflection symmetry breaks down when the boundary of the sample is misaligned with one of the high symmetry planes of the crystal. We demonstrate that this limitation is removed in amorphous…

Mesoscale and Nanoscale Physics · Physics 2021-08-10 Helene Spring , Anton R. Akhmerov , Daniel Varjas

We propose and analyze a physical system that naturally admits two-dimensional topological nearly flat bands. Our approach utilizes an array of three-level dipoles (effective S = 1 spins) driven by inhomogeneous electromagnetic fields. The…

Strongly Correlated Electrons · Physics 2013-11-28 Norman Y. Yao , Chris R. Laumann , Alexey V. Gorshkov , Steven D. Bennett , Eugene Demler , Peter Zoller , Mikhail D. Lukin

We present numerical calculations of lamellar phases of block copolymers at patterned surfaces. We model symmetric di-block copolymer films forming lamellar phases and the effect of geometrical and chemical surface patterning on the…

Soft Condensed Matter · Physics 2016-02-18 Xingkun Man , David Andelman , Henri Orland

We introduce a square tiling/tetragonal strip representation to the P, D, and G triply periodic minimal surfaces. This approach is useful in identifying mixtures and grain boundaries of these surfaces that might be useful for material…

Materials Science · Physics 2024-11-20 Chern Chuang , Bih-Yaw Jin

We study theoretically the entropic elasticity of a semi-flexible polymer, such as DNA, confined to two dimensions. Using the worm-like-chain model we obtain an exact analytical expression for the partition function of the polymer pulled at…

Soft Condensed Matter · Physics 2009-11-11 Ashok Prasad , Yuko Hori , Jane' Kondev

Ring polymers are characterized by topology-specific entanglements called threadings. In the limit of large rings, it is conjectured that a "topological glass" should emerge due to the proliferation of threadings. In this study, we used…

Soft Condensed Matter · Physics 2024-11-19 Shota Goto , Takenobu Nakamura , Davide Michieletto , Kang Kim , Nobuyuki Matubayasi

Many soft matter systems exhibit ordered, polycontinuous network morphologies, such as the cubic (double) gyroid or diamond, as well as disordered network morphologies known generically as ``random sponges". While presumed to share similar…

The 3D folding of a mammalian gene can be studied by a polymer model, where the chromatin fibre is represented by a semiflexible polymer which interacts with multivalent proteins, representing complexes of DNA-binding transcription factors…

Biological Physics · Physics 2023-12-20 Andrea Bonato , Dom Corbett , Sergey Kitaev , Davide Marenduzzo , Alexander Morozov , Enzo Orlandini