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Time-continuous dynamical systems defined on graphs are often used to model complex systems with many interacting components in a non-spatial context. In the reverse sense attaching meaningful dynamics to given 'interaction diagrams' is a…

Molecular Networks · Quantitative Biology 2010-07-02 Markus Kirkilionis , Luca Sbano

Comparing networks is essential for a number of downstream tasks, from clustering to anomaly detection. Despite higher-order interactions being critical for understanding the dynamics of complex systems, traditional approaches for network…

Physics and Society · Physics 2025-11-03 Helcio Felippe , Alec Kirkley , Federico Battiston

Multiparticle systems on complicated metric graphs might have many applications in physics, biology and social life. But the corresponding science still does not exist. Here we start it with simplest examples where there is quadratic…

Mathematical Physics · Physics 2023-06-16 V. A. Malyshev , A. A. Zamyatin

Graphs as a type of data structure have recently attracted significant attention. Representation learning of geometric graphs has achieved great success in many fields including molecular, social, and financial networks. It is natural to…

Machine Learning · Computer Science 2021-07-08 Tian Xia , Wei-Shinn Ku

In this paper, we propose a new type of graph, denoted as "embedded-graph", and its theory, which employs a distributed representation to describe the relations on the graph edges. Embedded-graphs can express linguistic and complicated…

Discrete Mathematics · Computer Science 2017-09-15 Atsushi Yokoyama

On a geometrical view, the conception of map geometries are introduced, which is a nice model of the Smarandache geometries, also new kind of and more general intrinsic geometry of surface. Results convinced one that map geometries are…

General Mathematics · Mathematics 2007-05-23 Linfan Mao

We give an overview of combinatorial methods to represent 3D data, such as graphs and meshes, from the viewpoint of their amenability to analysis using machine learning algorithms. We highlight pros and cons of various representations and…

Machine Learning · Computer Science 2024-08-19 Tomasz Prytuła

Graph Neural Networks (GNNs) have emerged as a prominent framework for graph mining, leading to significant advances across various domains. Stemmed from the node-wise representations of GNNs, existing explanation studies have embraced the…

Machine Learning · Computer Science 2024-07-03 Yuwen Wang , Shunyu Liu , Tongya Zheng , Kaixuan Chen , Mingli Song

Social learning algorithms provide models for the formation of opinions over social networks resulting from local reasoning and peer-to-peer exchanges. Interactions occur over an underlying graph topology, which describes the flow of…

Signal Processing · Electrical Eng. & Systems 2023-03-15 Valentina Shumovskaia , Konstantinos Ntemos , Stefan Vlaski , Ali H. Sayed

Network graphs have become a popular tool to represent complex systems composed of many interacting subunits; especially in neuroscience, network graphs are increasingly used to represent and analyze functional interactions between neural…

Information Theory · Computer Science 2015-11-24 Patricia Wollstadt , Ulrich Meyer , Michael Wibral

This paper, following (Dymetman:1998), presents an approach to grammar description and processing based on the geometry of cancellation diagrams, a concept which plays a central role in combinatorial group theory (Lyndon-Schuppe:1977). The…

Computation and Language · Computer Science 2007-05-23 Marc Dymetman

Graph theory provides fundamental concepts for many fields of science like statistical physics, network analysis and theoretical computer science. Here we give a pedagogical introduction to graph theory, divided into three sections. In the…

Disordered Systems and Neural Networks · Physics 2007-05-23 Alexander K. Hartmann , Martin Weigt

I will present a way to implement graph algorithms which is different from traditional methods. This work was motivated by the belief that some ideas from software engineering should be applied to graph algorithms. Re-usability of software…

Data Structures and Algorithms · Computer Science 2010-03-24 Marco Nissen

Many real-world networks of interest are embedded in physical space. We present a new random graph model aiming to reflect the interplay between the geometries of the graph and of the underlying space. The model favors configurations with…

Probability · Mathematics 2017-06-14 Jean-Christophe Mourrat , Daniel Valesin

Machine learning on graphs, especially using graph neural networks (GNNs), has seen a surge in interest due to the wide availability of graph data across a broad spectrum of disciplines, from life to social and engineering sciences. Despite…

In this paper we present a proof system that operates on graphs instead of formulas. Starting from the well-known relationship between formulas and cographs, we drop the cograph-conditions and look at arbitrary undirected) graphs. This…

Logic in Computer Science · Computer Science 2023-06-22 Matteo Acclavio , Ross Horne , Lutz Straßburger

Graph theory provides a language for studying the structure of relations, and it is often used to study interactions over time too. However, it poorly captures the both temporal and structural nature of interactions, that calls for a…

Social and Information Networks · Computer Science 2017-10-12 Matthieu Latapy , Tiphaine Viard , Clémence Magnien

In this paper, we extend the recently introduced concept of partially dual ribbon graphs to graphs. We then go on to characterize partial duality of graphs in terms of bijections between edge sets of corresponding graphs. This result…

Combinatorics · Mathematics 2012-03-01 Iain Moffatt

A paradigm that was successfully applied in the study of both pure and algorithmic problems in graph theory can be colloquially summarized as stating that "any graph is close to being the disjoint union of expanders". Our goal in this paper…

Combinatorics · Mathematics 2015-02-03 Guy Moshkovitz , Asaf Shapira

Interacting systems are ubiquitous in nature and engineering, ranging from particle dynamics in physics to functionally connected brain regions. These interacting systems can be modeled by graphs where edges correspond to the interactions…

Machine Learning · Computer Science 2024-01-25 Zhichao Han , Olga Fink , David S. Kammer