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We present attributed hierarchical port graphs (AHP) as an extension of port graphs that aims at facilitating the design of modular port graph models for complex systems. AHP consist of a number of interconnected layers, where each layer…

Logic in Computer Science · Computer Science 2018-02-20 Nneka Chinelo Ene , Maribel Fernández , Bruno Pinaud

We address the problem of graph classification based only on structural information. Inspired by natural language processing techniques (NLP), our model sequentially embeds information to estimate class membership probabilities. Besides, we…

Machine Learning · Computer Science 2019-05-14 Edouard Pineau , Nathan de Lara

In this extended abstract, we present a simple approach to convergence on term graphs that allows us to unify term graph rewriting and infinitary term rewriting. This approach is based on a partial order and a metric on term graphs. These…

Logic in Computer Science · Computer Science 2013-02-27 Patrick Bahr

Graphs, and graph transformation systems, are used in many areas within Computer Science: to represent data structures and algorithms, to define computation models, as a general modelling tool to study complex systems, etc. Research in term…

Symbolic Computation · Computer Science 2021-02-04 Patrick Bahr

Machine learning, deep learning, and NLP methods on knowledge graphs are present in different fields and have important roles in various domains from self-driving cars to friend recommendations on social media platforms. However, to apply…

Machine Learning · Computer Science 2024-09-25 Elika Bozorgi , Sakher Khalil Alqaiidi , Afsaneh Shams , Hamid Reza Arabnia , Krzysztof Kochut

Architectural Design Rewriting (ADR, for short) is a rule-based formal framework for modelling the evolution of architectures of distributed systems. Rules allow ADR graphs to be refined. After equipping ADR with a simple logic, we equip…

Logic in Computer Science · Computer Science 2012-12-19 Kyriakos Poyias , Emilio Tuosto

Logic optimization is an NP-hard problem commonly approached through hand-engineered heuristics. We propose to combine graph convolutional networks with reinforcement learning and a novel, scalable node embedding method to learn which local…

Machine Learning · Computer Science 2021-05-06 Xavier Timoneda , Lukas Cavigelli

A derivative structure is a nonequivalent substitutional atomic configuration derived from a given primitive cell. The enumeration of derivative structures plays an essential role in searching for the ground states in multicomponent…

Computational Physics · Physics 2025-06-25 Kohei Shinohara , Atsuto Seko , Takashi Horiyama , Masakazu Ishihata , Junya Honda , Isao Tanaka

The performance of codes defined from graphs depends on the expansion property of the underlying graph in a crucial way. Graph products, such as the zig-zag product and replacement product provide new infinite families of constant degree…

Information Theory · Computer Science 2007-08-20 Christine A. Kelley , Deepak Sridhara , Joachim Rosenthal

Higher-dimensional rewriting is founded on a duality of rewrite systems and cell complexes, connecting computational mathematics to higher categories and homotopy theory: the two sides of a rewrite rule are two halves of the boundary of an…

Category Theory · Mathematics 2023-04-20 Amar Hadzihasanovic , Diana Kessler

We address the problem of reasoning on graph transformations featuring actions such as \emph{addition} and \emph{deletion} of nodes and edges, node \emph{merging} and \emph{cloning}, node or edge \emph{labelling} and edge…

Logic in Computer Science · Computer Science 2018-03-08 Jon Haël Brenas , Rachid Echahed , Martin Strecker

An 'arithmetic circuit' is a labeled, acyclic directed graph specifying a sequence of arithmetic and logical operations to be performed on sets of natural numbers. Arithmetic circuits can also be viewed as the elements of the smallest…

Logic in Computer Science · Computer Science 2024-04-24 Ivo Düntsch , Ian Pratt-Hartmann

The lambda Pi calculus can be extended with rewrite rules to embed any functional pure type system. In this paper, we show that the embedding is conservative by proving a relative form of normalization, thus justifying the use of the lambda…

Logic in Computer Science · Computer Science 2015-04-22 Ali Assaf

Computational techniques are required for narrowing down the vast space of possibilities to plausible prebiotic scenarios, since precise information on the molecular composition, the dominant reaction chemistry, and the conditions for that…

Molecular Networks · Quantitative Biology 2018-02-07 Jakob L. Andersen , Christoph Flamm , Daniel Merkle , Peter F. Stadler

Enriched Lawvere theories are a generalization of Lawvere theories that allow us to describe the operational semantics of formal systems. For example, a graph enriched Lawvere theory describes structures that have a graph of operations of…

Category Theory · Mathematics 2020-09-16 John C. Baez , Christian Williams

Counting logics with a bounded number of variables form one of the central concepts in descriptive complexity theory. Although they restrict the number of variables that a formula can contain, the variables can be nested within scopes of…

Logic in Computer Science · Computer Science 2024-11-12 Simon Raßmann , Georg Schindling , Pascal Schweitzer

Motivated by the recently introduced topological index, the Somber index, we define a new topological index of a graph in this paper, we call it Sombor coindex. The Sombor coindex is defined by considering analogous contributions from the…

Combinatorics · Mathematics 2022-09-21 Phanjoubam Chinglensana , Sainkupar Mn Mawiong

Biological systems and processes are networks of complex nonlinear regulatory interactions between nucleic acids, proteins, and metabolites. A natural way in which to represent these interaction networks is through the use of a graph. In…

Molecular Networks · Quantitative Biology 2023-01-04 Jacob Rast

Ordered logics and type systems have been used in a variety of applications including computational linguistics, memory allocation, stream processing, logical frameworks, parametricity, and enforcing security protocols. In most…

Logic in Computer Science · Computer Science 2026-05-20 Sophia Roshal , Frank Pfenning

We propose two new dependent type systems. The first, is a dependent graded/linear type system where a graded dependent type system is connected via modal operators to a linear type system in the style of Linear/Non-linear logic. We then…

Logic in Computer Science · Computer Science 2023-07-20 Peter Hanukaev , Harley Eades