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Machine learning (ML) classifiers always benefit from more informative input features. We seek to auto-generate stronger feature sets in order to address the difficulty that ML methods often experience given limited training data. A wide…

Emerging Technologies · Computer Science 2020-09-15 Charles B Delahunt , J Nathan Kutz

Spike synchrony, which occurs in various cortical areas in response to specific perception, action and memory tasks, has sparked a long-standing debate on the nature of temporal organization in cortex. One prominent view is that this type…

Neurons and Cognition · Quantitative Biology 2017-12-18 Clemens Korndörfer , Ekkehard Ullner , Jordi García-Ojalvo , Gordon Pipa

Natural odors typically consist of many molecules at different concentrations. It is unclear how the numerous odorant molecules and their possible mixtures are discriminated by relatively few olfactory receptors. Using an…

Biological Physics · Physics 2016-08-26 David Zwicker , Arvind Murugan , Michael P. Brenner

A unique description avoiding confusion is presented for all flavor oscillation experiments in which particles of a definite flavor are emitted from a localized source. The probability for finding a particle with the wrong flavor must…

High Energy Physics - Phenomenology · Physics 2009-10-28 Yuval Grossman , Harry J. Lipkin

This work presents a general chemical reaction network theory for olfactory sensing processes that employ G-protein-coupled receptors as olfactory receptors (ORs). The theory is applicable to general mixtures of odorants and an arbitrary…

Molecular Networks · Quantitative Biology 2023-09-06 Won Kyu Kim , Kiri Choi , Changbong Hyeon , Seogjoo J. Jang

In this paper we propose the use of the Word2vec algorithm in order to obtain odor perception embeddings (or smell embeddings), only using publicly available perfume descriptions. Besides showing meaningful similarity relationships among…

Computation and Language · Computer Science 2022-03-22 Janek Amann , Manex Agirrezabal

We model sensory streams as observations from high-dimensional stochastic dynamical systems and conceptualize sensory neurons as self-supervised learners of compact representations of such dynamics. From prior experience, neurons learn…

The Drosophila mushroom body (MB) is known to be involved in olfactory learning and memory; the synaptic plasticity of the Kenyon cell (KC) to mushroom body output neuron (MBON) synapses plays a key role in the learning process. Previous…

Neurons and Cognition · Quantitative Biology 2025-09-25 Katherine Xie , Gabriel Koch Ocker

Causal relationship recognition is a fundamental operation in neural networks aimed at learning behavior, action planning, and inferring external world dynamics. This operation is particularly crucial for reinforcement learning (RL). In the…

Neural and Evolutionary Computing · Computer Science 2023-09-18 Mikhail Kiselev , Denis Larionov , Andrey Urusov

Many real-world time-series analysis problems are characterised by scarce data. Solutions typically rely on hand-crafted features extracted from the time or frequency domain allied with classification or regression engines which condition…

Inelastic electron transfer being regarded as one of the potential mechanisms to explain the odorant recognition in the atomic-scale processes is still a matter of intense debate. Here, we propose multiphonon processes of electrons transfer…

Biological Physics · Physics 2021-08-02 Shu-Quan Zhang , Yu Cui , Xue-Wei Li , Yong Sun , Zi-Wu Wang

At the single-neuron level, precisely timed spikes can either constitute firing-rate codes or spike-pattern codes that utilize the relative timing between consecutive spikes. There has been little experimental support for the hypothesis…

Neurons and Cognition · Quantitative Biology 2009-12-18 Hugo Gabriel Eyherabide , Ariel Rokem , Andreas V. M. Herz , Ines Samengo

Sensory hair cells in auditory and vestibular organs rely on active mechanisms to achieve high sensitivity and frequency selectivity. Recent experimental studies have documented self-sustained oscillations in hair cells of lower vertebrates…

Biological Physics · Physics 2012-09-28 Rami Amro , Alexander B. Neiman

In molecular communications, the direct detection of signaling molecules may be challenging due to a lack of suitable sensors and interference in the environment. Motivated by research in molecular biology, we investigate an indirect…

Information Theory · Computer Science 2022-04-25 Trang Ngoc Cao , Vahid Jamali , Wayan Wicke , Phee Lep Yeoh , Nikola Zlatanov , Jamie S Evans , Robert Schober

In this work we consider the question of whether a simple diffusive model can explain the scent tracking behaviours found in nature. For this behaviour to occur, both the concentration of a scent and its gradient must be above some…

Soft Condensed Matter · Physics 2021-03-31 Gerard McCaul , Andreas Mershin , Denys I. Bondar

Our knowledge of the sensory world is encoded by neurons in sequences of discrete, identical pulses termed action potentials or spikes. There is persistent controversy about the extent to which the precise timing of these spikes is relevant…

Neurons and Cognition · Quantitative Biology 2007-05-23 Ilya Nemenman , Geoffrey D. Lewen , William Bialek , Rob R. de Ruyter van Steveninck

How to effectively and efficiently deal with spatio-temporal event streams, where the events are generally sparse and non-uniform and have the microsecond temporal resolution, is of great value and has various real-life applications.…

Computer Vision and Pattern Recognition · Computer Science 2021-07-27 Man Yao , Huanhuan Gao , Guangshe Zhao , Dingheng Wang , Yihan Lin , Zhaoxu Yang , Guoqi Li

Nonlinear coupling between inter- and intra-element dynamics appears as a collective behaviour of elements. The elements in this paper denote symptoms such as a bacterium having an internal network of genes and proteins, a reactive droplet,…

Physics and Society · Physics 2013-05-29 Dan Tanaka

We describe a context-sensitive model of choice, in which the selection process is shaped not only by the attractiveness of items but also by their semantics ('salience'). All items are ranked according to a relation of salience, and a…

Theoretical Economics · Economics 2022-08-30 Alfio Giarlotta , Angelo Petralia , Stephen Watson

In the field of food, as in other fields, the measurement of emotional responses to food and their sensory properties is a major challenge. In the present protocol, we propose a step-by-step procedure that allows a physiological description…

Neurons and Cognition · Quantitative Biology 2024-05-28 Maelle Moranges , Marc Plantevit , Moustafa Bensafi