Related papers: Alternative Algorithms for Lyndon Factorization
In this paper, we explore applications of combinatorics on words across various domains, including data compression, error detection, cryptographic protocols, and pseudorandom number generation. The examination of the theoretical…
Motivated by applications to string processing, we introduce variants of the Lyndon factorization called inverse Lyndon factorizations. Their factors, named inverse Lyndon words, are in a class that strictly contains anti-Lyndon words, that…
We consider the problem of finding repetitive structures and inherent patterns in a given string $\s{s}$ of length $n$ over a finite totally ordered alphabet. A border $\s{u}$ of a string $\s{s}$ is both a prefix and a suffix of $\s{s}$…
The Burrows-Wheeler Transform (BWT) serves as the basis for many important sequence indexes. On very large datasets (e.g. genomic databases), classical BWT construction algorithms are often infeasible because they usually need to have the…
The Earley algorithm is a widely used parsing method in natural language processing applications. We introduce a variant of Earley parsing that is based on a ``delayed'' recognition of constituents. This allows us to start the recognition…
We present a new, simple, and efficient approach for computing the Lempel-Ziv (LZ77) factorization of a string in linear time, based on suffix arrays. Computational experiments on various data sets show that our approach constantly…
In this report, we consider Adelman's algorithm for generating shortest permutation strings. We introduce a new representation approach which reveals some properties of Adelman's algorithm.
In this paper, two approximation algorithms are given. Let N be an odd composite number. The algorithms give new directions regarding primality test of given N. The first algorithm is given using a new method called digital coding method.…
We present an algorithm which computes the Lempel-Ziv factorization of a word $W$ of length $n$ on an alphabet $\Sigma$ of size $\sigma$ online in the following sense: it reads $W$ starting from the left, and, after reading each $r =…
We give an $\mathcal{O}(n \log n)$-time, $\mathcal{O}(n)$-space algorithm for factoring a string into the minimum number of palindromic substrings. That is, given a string $S [1..n]$, in $\mathcal{O}(n \log n)$ time our algorithm returns…
We study the IS-algorithm, a well-known linear-time algorithm for computing the suffix array of a word. This algorithm relies on transforming the input word $w$ into another word, called the reduced word of $w$, that will be at least twice…
In this paper, we extend the notion of Lyndon word to transfinite words. We prove two main results. We first show that, given a transfinite word, there exists a unique factorization in Lyndon words that are densely non-increasing, a…
Given a pattern $P$ and a text $T$, both strings over a binary alphabet, the binary jumbled string matching problem consists in telling whether any permutation of $P$ occurs in $T$. The indexed version of this problem, i.e., preprocessing a…
While existing algorithms may be used to solve a linear system over a general field in matrix-multiplication time, the complexity of constructing a symmetric triangular factorization (LDL) has received relatively little formal study. The…
A run in a string is a maximal periodic substring. For example, the string $\texttt{bananatree}$ contains the runs $\texttt{anana} = (\texttt{an})^{3/2}$ and $\texttt{ee} = \texttt{e}^2$. There are less than $n$ runs in any length-$n$…
Designing short DNA words is a problem of constructing a set (i.e., code) of n DNA strings (i.e., words) with the minimum length such that the Hamming distance between each pair of words is at least k and the n words satisfy a set of…
Our paper "Solving Third Order Linear Difference Equations in Terms of Second Order Equations" gave two algorithms for solving difference equations in terms of lower order equations: an algorithm for absolute factorization, and an algorithm…
This paper presents an efficient method for LR parsing of permutation phrases. In practical cases, the proposed algorithm constructs an LR(0) automaton that requires significantly fewer states to process a permutation phrase compared to the…
In this paper we consider two problems concerning string factorisation. Specifically given a string $w$ and an integer $k$ find a factorisation of $w$ where each factor has length bounded by $k$ and has the minimum (the FmD problem) or the…
Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…