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The myriad microscopic interactions among the individual organisms that constitute an ecological system collectively give rise, at the macroscopic scale, to evolutionary trends. The ability to detect the directionality of such trends is…

Populations and Evolution · Quantitative Biology 2025-07-21 Andrea Marchetti , Henrik Jeldtoft Jensen

Citrus diseases have been major issues for citrus growing worldwide for many years they can lead significantly reduce fruit quality. the most harmful citrus diseases are citrus canker, citrus greening, citrus black spot, citrus leaf miner…

Machine Learning · Computer Science 2023-06-06 Muhammad Shoaib Farooq , Abdullah Mehboob

Relationships are vital for mankind in many aspects. According to Maslow hierarchy of needs, it is suggested that while a healthy relationship is an essential part of a human life that fundamentally determines our goals and purposes, an…

A conflict exists between field biologists and physiologists ("functional biologists" or "evolutionary ecologists") on the one hand and those working in molecular evolution ("evolutionary biologists" or "population geneticists") on the…

Populations and Evolution · Quantitative Biology 2018-04-02 George F R Ellis

Ecosystems, which are intricate amalgams of biological communities and their surrounding environments, continually evolve under the influence of their myriad interactions. The world is currently facing intensifying environmental…

Biological Physics · Physics 2023-11-23 Ikumi Kobayashi

The course of an epidemic is not only shaped by infection transmission over face-to-face contacts, but also by preventive behaviour caused by risk perception and social interactions. This study explores the dynamics of coupled awareness and…

Physics and Society · Physics 2025-02-24 Tim Van Wesemael , Luis E. C. Rocha , Jan M. Baetens

Biological networks are a very convenient modelling and visualisation tool to discover knowledge from modern high-throughput genomics and postgenomics data sets. Indeed, biological entities are not isolated, but are components of complex…

Quantitative Methods · Quantitative Biology 2018-05-07 Alex White , Matthieu Vignes

This paper addresses the challenge of viewing and navigating Bayesian networks as their structural size and complexity grow. Starting with a review of the state of the art of visualizing Bayesian networks, an area which has largely been…

Artificial Intelligence · Computer Science 2017-07-05 Clifford Champion , Charles Elkan

Interacting biological systems at all organizational levels display emergent behavior. Modeling these systems is made challenging by the number and variety of biological components and interactions (from molecules in gene regulatory…

Molecular Networks · Quantitative Biology 2023-10-20 Jordan C. Rozum , Colin Campbell , Eli Newby , Fatemeh Sadat Fatemi Nasrollahi , Reka Albert

The assembly and persistence of ecological communities can be understood as the result of the interaction and migration of species. Here we study a single community subject to migration from a species pool in which inter-specific…

Populations and Evolution · Quantitative Biology 2023-07-27 Matthew Dopson , Clive Emary

Toxic cyanobacterial blooms are a growing environmental concern that affects freshwater ecosystems, drinking water supplies, and public health. The cyanobacterium Microcystis is among the most important bloom forming species. It often grows…

The impacts of mass migration, such as crisis induced by climate change, extend beyond environmental concerns and can greatly affect social infrastructure and public services, such as education, healthcare, and security. These crises…

Computers and Society · Computer Science 2023-11-28 Kenneth Lai , Svetlana Yanushkevich

In this brief, we study epidemic spreading dynamics taking place in complex networks. We specifically investigate the effect of synergy, where multiple interactions between nodes result in a combined effect larger than the simple sum of…

Social and Information Networks · Computer Science 2019-04-23 Masaki Ogura , Wenjie Mei , Kenji Sugimoto

Physicists study a wide variety of phenomena creating new interdisciplinary research fields by applying theories and methods originally developed in physics in order to solve problems in economics, social science, biology, medicine,…

Popular Physics · Physics 2007-07-24 D. Volchenkov , Ph. Blanchard

This paper models brucellosis transmission between elk, cattle, and bison, of high conservation value, in the Greater Yellowstone Ecosystem (GYE). It aims to show how landscape changes in the GYE concomitantly impact brucellosis prevalence…

Populations and Evolution · Quantitative Biology 2022-08-03 Dustin G. Padilla

A common theme among the proposed models for network epidemics is the assumption that the propagating object, i.e., a virus or a piece of information, is transferred across the nodes without going through any modification or evolution.…

Physics and Society · Physics 2019-11-05 Rashad Eletreby , Yong Zhuang , Kathleen M. Carley , Osman Yağan , H. Vincent Poor

Cyanobacterial blooms (CBs) pose significant global challenges due to their harmful toxins and socio-economic impacts, with nutrient availability playing a key role in their growth, as described by ecological stoichiometry (ES). However,…

Analysis of PDEs · Mathematics 2025-02-19 Jacob Serpico , Kyunghan Choi , B. A. Zambrano-Luna , Tianxu Wang , Hao Wang

Understanding systems level behaviour of many interacting agents is challenging in various ways, here we'll focus on the how the interaction between components can lead to hierarchical structures with different types of dynamics, or…

Populations and Evolution · Quantitative Biology 2018-12-26 Henrik Jeldtoft Jensen

The identification of key populations shaping the structure and connectivity of metapopulation systems is a major challenge in population ecology. The use of molecular markers in the theoretical framework of population genetics has allowed…

Populations and Evolution · Quantitative Biology 2008-11-21 Alejandro F. Rozenfeld , Sophie Arnaud-Haond , Emilio Hernandez-Garcia , Victor M. Eguiluz , Ester A. Serrao , Carlos M. Duarte

Complex systems are characterized by many interacting units that give rise to emergent behavior. A particularly advantageous way to study these systems is through the analysis of the networks that encode the interactions among the system's…

Physics and Society · Physics 2019-03-21 Alberto Aleta , Yamir Moreno