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In the domain of network biology, the interactions among heterogeneous genomic and molecular entities are represented through networks. Link prediction (LP) methodologies are instrumental in inferring missing or prospective associations…

Molecular Networks · Quantitative Biology 2023-12-05 Ahmad F. Al Musawi , Satyaki Roy , Preetam Ghosh

A large body of research on link prediction problem is devoted to finding missing links in single-layer (simplex) networks. The proposed link prediction methods compute a similarity measure between unconnected node pairs based on the…

Topology and weights are closely related in weighted complex networks and this is reflected in their modular structure. We present a simple network model where the weights are generated dynamically and they shape the developing topology. By…

Physics and Society · Physics 2008-01-30 J. M. Kumpula , J. -P. Onnela , J. Saramaki , K. Kaski , J. Kertesz

The idea of a collective intelligence behind the complex natural structures built by organisms suggests that the organization of social networks is selected so as to optimize problem-solving competence at the group-level. Here we study the…

Social and Information Networks · Computer Science 2016-09-19 José F. Fontanari , Francisco A. Rodrigues

Being able to recommend links between users in online social networks is important for users to connect with like-minded individuals as well as for the platforms themselves and third parties leveraging social media information to grow their…

Social and Information Networks · Computer Science 2022-06-29 Mustafa Toprak , Chiara Boldrini , Andrea Passarella , Marco Conti

Relational data are ubiquitous in real-world data applications, e.g., in social network analysis or biological modeling, but networks are nearly always incompletely observed. The state-of-the-art for predicting missing links in the hard…

Machine Learning · Computer Science 2025-08-13 Bisman Singh , Lucy Van Kleunen , Aaron Clauset

Link prediction systems (e.g. recommender systems) typically use graph topology as one of their main sources of information. However, automorphisms and related properties of graphs beget inherent limits in predictability. We calculate hard…

Social and Information Networks · Computer Science 2023-06-28 Justus I. Hibshman , Tim Weninger

Complex networks are frequently employed to model physical or virtual complex systems. When certain entities exist across multiple systems simultaneously, unveiling their corresponding relationships across the networks becomes crucial. This…

Physics and Society · Physics 2025-04-16 Rui Tang , Ziyun Yong , Shuyu Jiang , Xingshu Chen , Yaofang Liu , Yi-Cheng Zhang , Gui-Quan Sun , Wei Wang

Link prediction is an important network science problem in many domains such as social networks, chem/bio-informatics, etc. Most of these networks are dynamic in nature with patterns evolving over time. In such cases, it is necessary to…

Social and Information Networks · Computer Science 2015-09-18 Jeyanthi Narasimhan , Lawrence Holder

Most real-world networks are incompletely observed. Algorithms that can accurately predict which links are missing can dramatically speedup the collection of network data and improve the validity of network models. Many algorithms now exist…

Machine Learning · Statistics 2020-10-05 Amir Ghasemian , Homa Hosseinmardi , Aram Galstyan , Edoardo M. Airoldi , Aaron Clauset

Link prediction, or the inference of future or missing connections between entities, is a well-studied problem in network analysis. A multitude of heuristics exist for link prediction in ordinary networks with a single type of connection.…

Machine Learning · Computer Science 2020-04-10 Robert E. Tillman , Vamsi K. Potluru , Jiahao Chen , Prashant Reddy , Manuela Veloso

Community detection is a fundamental problem in the analysis of complex networks. It is the analogue of clustering in network data mining. Within community detection methods, hierarchical algorithms are popular. However, their iterative…

Machine Learning · Computer Science 2020-09-16 Julio-Omar Palacio-Niño , Fernando Berzal

Finding community structures in networks is important in network science, technology, and applications. To date, most algorithms that aim to find community structures only focus either on unipartite or bipartite networks. A unipartite…

Physics and Society · Physics 2014-09-16 Chang Chang , Chao Tang

Complex prediction models such as deep learning are the output from fitting machine learning, neural networks, or AI models to a set of training data. These are now standard tools in science. A key challenge with the current generation of…

Machine Learning · Computer Science 2022-10-21 Meng Liu , Tamal K. Dey , David F. Gleich

Community structure is one of the key properties of real-world complex networks. It plays a crucial role in their behaviors and topology. While an important work has been done on the issue of community detection, very little attention has…

Social and Information Networks · Computer Science 2015-04-02 Malek Jebabli , Hocine Cherifi , Chantal Cherifi , Atef Hamouda

We consider the link prediction problem in a partially observed network, where the objective is to make predictions in the unobserved portion of the network. Many existing methods reduce link prediction to binary classification problem.…

Machine Learning · Statistics 2016-02-23 Bopeng Li , Sougata Chaudhuri , Ambuj Tewari

Many complex systems can be represented as networks, and the problem of network comparison is becoming increasingly relevant. There are many techniques for network comparison, from simply comparing network summary statistics to…

Machine Learning · Statistics 2017-04-04 Anatol E. Wegner , Luis Ospina-Forero , Robert E. Gaunt , Charlotte M. Deane , Gesine Reinert

Processes on networks consist of two interdependent parts: the network topology, consisting of the links between nodes, and the dynamics, specified by some governing equations. This work considers the prediction of the future dynamics on an…

Physics and Society · Physics 2022-11-08 Bastian Prasse , Piet Van Mieghem

Community detection in networks is commonly performed using information about interactions between nodes. Recent advances have been made to incorporate multiple types of interactions, thus generalizing standard methods to multilayer…

Social and Information Networks · Computer Science 2020-10-29 Martina Contisciani , Eleanor Power , Caterina De Bacco

Predictions of missing links of incomplete networks like protein-protein interaction networks or very likely but not yet existent links in evolutionary networks like friendship networks in web society can be considered as a guideline for…

Data Analysis, Statistics and Probability · Physics 2009-10-27 Linyuan Lv , Ci-Hang Jin , Tao Zhou
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